Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.3e-91 339.7 179 100.0
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 4.3e-66 255.0 176 75.6
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 7.4e-66 254.2 176 72.7
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.4e-64 250.0 175 73.7
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.7e-62 243.0 176 72.7
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 8.4e-62 240.7 176 71.0
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 8.4e-62 240.7 171 73.1
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 7.1e-61 237.7 175 68.6
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 9.3e-61 237.3 176 67.6
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 3.5e-60 235.3 175 70.3
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 4.6e-60 235.0 175 69.7
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 4.6e-60 235.0 177 68.4
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.3e-59 233.4 177 70.1
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.3e-59 232.6 176 67.6
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 3.0e-59 232.3 175 69.1
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 3.0e-59 232.3 175 68.0
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 3.0e-59 232.3 181 69.1
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.9e-59 231.9 175 68.6
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 3.9e-59 231.9 175 68.6
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.1e-59 231.5 176 69.3
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 6.7e-59 231.1 177 68.4
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.7e-59 231.1 177 68.4
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.7e-59 231.1 177 68.4
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-58 229.9 175 69.7
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.9e-58 229.6 177 71.8
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.3e-58 228.4 168 70.2
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 5.7e-58 228.0 177 71.2
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 5.7e-58 228.0 171 66.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 7.4e-58 227.6 176 67.0
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 7.4e-58 227.6 177 67.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 9.6e-58 227.3 173 65.3
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.3e-57 226.9 175 68.6
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.6e-57 226.5 176 69.3
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.6e-57 226.5 176 69.3
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.1e-57 226.1 175 68.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.8e-57 225.7 175 68.6
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 3.7e-57 225.3 176 67.6
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 4.8e-57 224.9 175 66.9
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 8.2e-57 224.2 175 66.3
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 8.2e-57 224.2 171 66.1
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.1e-56 223.8 175 62.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.8e-56 223.0 176 65.9
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.8e-56 223.0 177 65.0
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.8e-56 223.0 178 65.7
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 4.0e-56 221.9 184 63.6
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 5.3e-56 221.5 171 66.1
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-55 219.9 175 64.0
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.5e-55 219.9 185 60.5
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 2.6e-55 219.2 175 66.3
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 3.4e-55 218.8 183 63.4
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 4.5e-55 218.4 176 65.9
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.8e-55 218.0 175 63.4
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 5.8e-55 218.0 177 65.5
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 5.8e-55 218.0 175 65.1
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 5.8e-55 218.0 167 65.9
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.0e-54 217.2 171 68.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.0e-54 217.2 171 68.4
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.0e-54 217.2 171 65.5
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.0e-54 217.2 184 62.5
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.0e-54 217.2 193 62.7
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.3e-54 216.9 175 65.1
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 6.5e-54 214.5 180 64.4
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 6.5e-54 214.5 176 66.5
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 3.5e-52 208.8 178 60.7
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.9e-52 207.6 175 60.6
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 2.3e-51 206.1 174 62.1
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.3e-51 206.1 171 61.4
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 8.7e-51 204.1 171 63.7
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.1e-50 203.8 171 62.6
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.5e-50 203.4 171 60.8
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.5e-50 203.4 171 60.8
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.9e-50 203.0 171 61.4
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 2.5e-50 202.6 171 63.7
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 3.3e-50 202.2 171 60.8
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 4.3e-50 201.8 173 60.1
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 9.7e-50 200.7 171 60.8
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.3e-49 200.3 176 61.4
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.6e-49 199.9 171 58.5
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 2.2e-49 199.5 171 59.6
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 2.2e-49 199.5 171 59.6
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 4.8e-49 198.4 171 59.6
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 4.8e-49 198.4 171 62.0
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 6.3e-49 198.0 171 59.6
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 6.3e-49 198.0 171 59.6
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 6.3e-49 198.0 171 59.6
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 8.2e-49 197.6 176 60.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.1e-48 197.2 171 59.1
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.8e-48 196.4 145 71.7
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.6e-47 192.6 170 61.2
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.0e-46 190.7 177 57.1
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.0e-46 190.7 175 58.3
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 2.9e-46 189.1 175 61.1
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 2.9e-46 189.1 178 58.4
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 3.8e-46 188.7 172 61.0
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 5.0e-46 188.3 178 58.4
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 3.2e-45 185.7 177 55.4
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.4e-43 180.3 145 65.5
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.0e-43 179.1 154 58.4
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.9e-43 178.7 178 52.2
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 3.3e-42 175.6 171 52.6
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 6.3e-41 171.4 171 54.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 6.3e-41 171.4 171 55.0
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.1e-40 170.6 171 54.4
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 9.1e-40 167.5 112 73.2
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 9.1e-40 167.5 145 64.1
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.7e-38 163.3 144 60.4
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-38 162.9 183 53.0
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.2e-38 162.9 177 53.7
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 7.9e-36 154.5 148 54.7
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.7e-33 146.7 171 48.5
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.8e-33 146.0 103 67.0
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-26 123.2 110 60.9
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 4.4e-26 122.1 111 61.3
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 9.7e-26 120.9 110 60.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-25 119.4 126 54.8
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.2e-25 117.9 111 60.4
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 5.3e-24 115.2 74 74.3
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 9.1e-24 114.4 76 77.6
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 5.0e-22 108.6 174 42.0
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-20 104.0 83 68.7
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 6.1e-20 101.7 74 68.9
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 6.1e-20 101.7 171 38.6
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 4.1e-16 89.0 58 72.4
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-15 86.3 85 56.5
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 4.5e-15 85.5 174 35.6
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 2.2e-14 83.2 54 70.4
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.0e-14 82.0 90 52.2
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.9e-13 80.1 56 64.3
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.5e-13 78.6 81 55.6
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 3.6e-12 75.9 81 50.6
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-11 73.6 78 52.6
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.8e-11 71.6 80 50.0
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.4e-08 63.9 188 29.8
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 9.1e-08 61.2 97 42.3
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.2e-07 60.8 153 30.1
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 3.8e-06 55.8 45 68.9
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 8.6e-06 54.7 39 64.1
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 8.6e-06 54.7 42 64.3


User provided reference genes

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