Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 6.7e-182 640.6 329 100.0
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 6.4e-100 368.2 328 57.0
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 1.5e-96 357.1 328 56.1
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 1.5e-96 357.1 329 56.2
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 6.2e-95 351.7 330 55.2
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 2.0e-93 346.7 325 56.9
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 4.5e-93 345.5 326 56.1
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 5.8e-93 345.1 326 57.4
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 5.8e-93 345.1 331 56.2
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 9.9e-93 344.4 325 56.3
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.3e-92 344.0 325 56.6
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.9e-92 342.8 325 56.3
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 3.8e-92 342.4 325 52.9
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 4.9e-92 342.0 327 53.8
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 4.9e-92 342.0 327 53.2
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 1.2e-90 337.4 332 53.9
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 1.6e-90 337.0 322 57.1
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 1.6e-90 337.0 327 53.2
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.1e-90 336.7 326 56.7
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 2.1e-90 336.7 325 52.9
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 3.5e-90 335.9 331 55.6
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.6e-90 335.5 328 56.1
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 4.6e-90 335.5 330 54.5
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 4.6e-90 335.5 328 54.0
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.8e-89 333.6 327 55.4
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 1.1e-88 330.9 329 53.5
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 1.5e-88 330.5 325 55.4
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 1.9e-88 330.1 327 52.3
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 1.6e-87 327.0 325 55.1
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.8e-87 326.2 324 53.4
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.8e-87 326.2 324 53.4
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 4.8e-87 325.5 328 50.9
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 1.8e-86 323.6 330 54.8
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 2.4e-86 323.2 328 50.3
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 2.4e-86 323.2 327 51.7
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 2.4e-86 323.2 331 52.3
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 3.4e-85 319.3 331 52.0
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 7.6e-85 318.2 329 50.2
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 1.7e-84 317.0 326 52.8
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 1.7e-84 317.0 329 52.6
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 2.9e-84 316.2 330 50.6
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 1.2e-82 310.8 328 49.4
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 1.6e-82 310.5 329 52.6
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 3.5e-82 309.3 325 48.9
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 6.0e-82 308.5 330 51.2
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 6.0e-82 308.5 328 51.5
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.8e-81 307.0 330 51.5
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 8.7e-81 304.7 331 50.2
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 1.1e-80 304.3 328 50.3
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 1.9e-80 303.5 326 50.0
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.9e-80 303.5 330 50.9
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 3.3e-80 302.8 325 52.0
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 1.6e-79 300.4 273 56.4
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 2.8e-79 299.7 331 48.9
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 4.8e-79 298.9 324 50.3
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 5.3e-78 295.4 335 49.9
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 4.5e-77 292.4 323 49.2
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 7.6e-77 291.6 330 50.6
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 1.0e-76 291.2 330 48.5
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 1.7e-76 290.4 319 48.0
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 1.7e-76 290.4 329 48.6
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 1.9e-75 287.0 323 47.7
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 2.5e-75 286.6 329 49.2
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 3.2e-75 286.2 323 47.4
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 7.2e-75 285.0 330 47.0
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 1.6e-74 283.9 326 46.3
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 6.1e-74 282.0 328 45.4
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 1.0e-73 281.2 328 47.6
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 3.9e-73 279.3 332 46.7
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 3.9e-73 279.3 326 50.6
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 5.1e-73 278.9 330 47.6
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 7.4e-72 275.0 329 50.2
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 1.7e-71 273.9 326 50.9
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 1.7e-71 273.9 327 44.6
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 3.7e-71 272.7 324 46.0
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 4.8e-71 272.3 328 48.5
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 5.3e-70 268.9 326 51.2
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 1.2e-69 267.7 321 50.2
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 1.2e-69 267.7 321 50.2
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 1.5e-69 267.3 325 48.6
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 1.0e-68 264.6 328 48.8
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 1.3e-68 264.2 322 48.4
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 2.2e-68 263.5 327 43.4
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 5.0e-68 262.3 322 47.8
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 6.5e-68 261.9 264 54.5
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 1.6e-66 257.3 290 48.3
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 2.7e-66 256.5 337 47.8
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 5.7e-64 248.8 324 46.3
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 7.4e-64 248.4 315 45.4
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.5e-61 240.7 311 47.3
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 5.9e-61 238.8 328 44.2
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 1.0e-60 238.0 301 48.2
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 1.2e-58 231.1 304 47.4
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.7e-55 220.7 239 51.9
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.7e-55 220.7 239 51.9
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 6.3e-55 218.8 241 51.5
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 4.5e-53 212.6 332 40.1
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 2.5e-51 206.8 330 40.6
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 1.5e-48 197.6 332 39.2
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 4.5e-45 186.0 315 39.7
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 8.5e-44 181.8 321 38.0
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 2.4e-38 163.7 235 43.8
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 9.5e-35 151.8 238 40.3
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 8.0e-34 148.7 353 30.9
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 5.2e-33 146.0 183 44.3
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 1.8e-30 137.5 180 48.3
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 5.6e-27 125.9 157 48.4
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.6e-26 123.2 91 68.1
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.6e-26 123.2 91 68.1
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 3.1e-25 120.2 215 38.6
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 1.3e-23 114.8 335 30.1
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 1.4e-22 111.3 315 29.5
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 9.2e-22 108.6 129 48.8
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 4.6e-21 106.3 102 51.0
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.7e-20 104.4 83 63.9
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 3.2e-14 83.6 82 47.6
Cre09.g400997 Chlamydomonas reinhardtii HOM05D006726 ORTHO05D008328 3.4e-08 63.5 319 24.5
CBR_g4449 Chara braunii HOM05D006726 ORTHO05D008328 2.4e-06 57.4 133 33.1


User provided reference genes

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