Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 7.0e-150 535.0 583 100.0
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.6e-72 277.3 215 64.2
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 4.0e-52 210.3 250 47.6
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 6.8e-52 209.5 250 47.6
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 3.8e-47 193.7 246 45.1
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 1.7e-42 178.3 201 45.3
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 4.9e-42 176.8 226 45.6
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.4e-41 175.3 221 45.2
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 5.4e-41 173.3 225 44.0
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 2.7e-40 171.0 213 42.7
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.6e-40 170.2 219 44.7
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 5.9e-40 169.9 210 42.9
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-39 169.1 189 49.2
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-39 169.1 189 49.2
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 5.0e-39 166.8 188 47.9
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 6.6e-39 166.4 188 47.9
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 2.5e-38 164.5 183 46.4
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 3.3e-38 164.1 224 42.9
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 9.5e-38 162.5 204 41.7
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 1.2e-37 162.2 197 43.7
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.6e-37 161.8 167 47.3
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 2.8e-37 161.0 190 45.8
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.6e-37 160.6 202 41.6
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 6.2e-37 159.8 224 39.7
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 8.0e-37 159.5 235 37.4
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.4e-36 158.7 197 43.1
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 1.4e-36 158.7 197 43.1
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 1.8e-36 158.3 216 41.2
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 5.2e-36 156.8 197 40.6
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 5.2e-36 156.8 187 44.9
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.2e-35 155.6 197 42.1
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 5.8e-35 153.3 225 36.4
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.3e-34 152.1 189 46.6
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.3e-34 152.1 179 43.0
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 1.7e-34 151.8 182 43.4
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.7e-34 151.8 212 38.7
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 2.2e-34 151.4 198 40.9
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.9e-34 150.2 183 42.6
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.9e-34 150.2 183 42.6
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 8.3e-34 149.4 260 38.1
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.1e-33 149.1 210 40.5
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.9e-33 148.3 177 45.8
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 2.4e-33 147.9 214 40.2
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 3.2e-33 147.5 178 43.8
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 7.0e-33 146.4 174 42.5
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.6e-32 145.2 190 44.2
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 3.5e-32 144.1 215 41.4
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 4.6e-32 143.7 196 38.3
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 6.0e-32 143.3 179 43.6
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.0e-31 142.5 190 40.5
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.7e-31 141.7 153 48.4
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.7e-31 141.7 208 38.0
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 1.7e-31 141.7 179 40.8
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 3.0e-31 141.0 183 47.0
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 5.0e-31 140.2 180 41.7
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 5.0e-31 140.2 208 41.8
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 6.6e-31 139.8 183 46.4
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 1.9e-30 138.3 215 40.9
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 1.9e-30 138.3 205 36.1
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 3.3e-30 137.5 207 38.2
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 3.3e-30 137.5 209 39.7
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.2e-29 135.6 183 39.3
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.2e-29 135.6 207 39.6
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.2e-29 135.6 207 40.1
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.6e-29 135.2 209 39.7
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.6e-29 135.2 209 39.7
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.6e-29 135.2 207 39.6
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 2.1e-29 134.8 206 39.8
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 2.1e-29 134.8 209 40.2
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 2.1e-29 134.8 177 40.7
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 4.7e-29 133.7 157 48.4
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 8.1e-29 132.9 209 39.2
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 8.1e-29 132.9 180 38.3
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 1.4e-28 132.1 207 39.6
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.8e-28 131.7 206 37.4
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 2.3e-28 131.3 211 39.8
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 2.3e-28 131.3 212 39.2
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 4.0e-28 130.6 211 38.9
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 4.0e-28 130.6 205 39.5
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 5.2e-28 130.2 211 38.9
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 6.8e-28 129.8 175 41.7
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 8.9e-28 129.4 202 40.1
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.5e-27 128.6 180 39.4
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 2.6e-27 127.9 203 40.4
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 4.4e-27 127.1 212 38.7
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 5.8e-27 126.7 188 41.0
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 9.8e-27 125.9 153 41.8
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 2.9e-26 124.4 219 38.4
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 4.9e-26 123.6 144 44.4
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 6.4e-26 123.2 207 36.2
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 7.1e-25 119.8 214 36.4
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 7.1e-25 119.8 214 36.4
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 1.2e-24 119.0 138 47.8
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 2.1e-24 118.2 157 42.7
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 3.5e-24 117.5 188 39.9
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 1.7e-23 115.2 152 43.4
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.7e-23 115.2 156 42.9
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 3.0e-23 114.4 208 35.1
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 3.0e-23 114.4 208 35.1
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 5.1e-23 113.6 210 34.8
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 1.1e-22 112.5 146 42.5
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 3.3e-22 110.9 162 40.1
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 4.3e-22 110.5 149 41.6
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 5.6e-22 110.2 194 36.6
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 7.3e-22 109.8 130 39.2
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.2e-21 109.0 140 40.7
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.6e-21 107.5 203 34.5
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 6.2e-21 106.7 188 34.6
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.1e-20 105.9 203 34.5
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 4.0e-20 104.0 170 38.2
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 4.0e-20 104.0 145 36.6
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 9.9e-19 99.4 168 35.1
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 3.8e-18 97.4 92 52.2
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 3.8e-18 97.4 155 36.8
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 4.3e-14 84.0 92 43.5
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.4e-12 79.0 108 38.0
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 8.4e-10 69.7 107 36.4
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 4.2e-09 67.4 141 33.3
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 3.9e-07 60.8 66 43.9
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 6.6e-07 60.1 108 30.6
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 1.5e-06 58.9 110 38.2


User provided reference genes

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