Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1769.2 862 100.0
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1374.4 884 75.3
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1374.0 865 76.6
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1364.4 876 75.1
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1360.1 865 76.8
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1359.0 865 75.6
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1313.9 864 73.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1308.5 866 73.0
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 863 72.0
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1298.1 867 72.3
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1296.6 861 71.8
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1293.9 866 71.2
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 866 71.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1284.2 866 70.8
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 871 71.2
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 860 70.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 860 69.9
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1276.5 866 70.9
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1276.2 867 70.7
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1275.0 860 71.3
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 871 70.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1273.8 864 70.7
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1272.3 860 71.2
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1271.9 860 71.2
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1271.1 869 70.0
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 860 70.0
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 869 69.9
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1269.6 876 69.9
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 863 70.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1268.4 860 70.2
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 860 69.8
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1264.6 874 69.8
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 858 69.7
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1263.1 860 69.7
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1261.9 860 69.7
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1261.1 863 69.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1261.1 866 70.8
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 867 70.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 863 70.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 867 70.5
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 863 69.5
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 864 69.7
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1258.0 862 70.2
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 861 69.9
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 864 69.4
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1255.0 865 68.9
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1252.7 865 69.9
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 867 70.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1248.0 863 70.3
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 864 68.4
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 863 69.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 868 68.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 882 67.8
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 871 69.7
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 859 69.3
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1242.3 869 68.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 865 68.0
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1239.6 865 68.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1236.9 861 68.6
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 861 69.0
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 860 68.5
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 861 68.8
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 863 68.7
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 864 67.9
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 862 68.6
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 862 68.3
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 863 68.4
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 862 68.2
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 866 67.6
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 865 68.3
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1224.9 862 68.1
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 860 68.6
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 862 68.4
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 865 68.2
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 867 67.7
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 859 68.7
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 863 67.3
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1217.2 863 68.5
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 857 67.9
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 864 67.7
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 873 67.0
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 871 66.5
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 863 67.7
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1204.9 864 67.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 860 67.3
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1196.8 859 67.5
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1196.4 856 67.5
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 826 70.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1128.6 869 63.1
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1095.1 853 62.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1084.3 743 71.2
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.2e-311 1073.2 856 61.8
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.8e-306 1055.8 863 59.4
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.1e-305 1053.1 691 71.6
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 4.9e-301 1037.7 854 62.1
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.2e-300 1035.0 646 75.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.3e-290 1003.0 862 55.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 3.0e-290 1001.9 692 69.5
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.1e-287 993.4 856 57.1
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.5e-284 982.2 864 54.9
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.1e-271 938.7 864 52.5
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 5.6e-204 715.3 770 47.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.5e-159 567.0 388 71.4
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 2.2e-155 553.9 473 58.4
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.4e-141 508.1 458 54.6
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 6.6e-128 462.6 356 63.5
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 9.9e-92 342.4 307 58.3
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 7.9e-73 279.6 204 67.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.5e-66 258.1 168 71.4
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 6.5e-51 206.8 172 61.0
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.4e-47 194.1 172 55.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 5.2e-40 170.6 199 47.2
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.1e-37 161.4 216 43.1
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.4e-34 149.8 120 62.5
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 3.3e-31 141.4 150 46.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.6e-28 132.5 85 71.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.3e-24 118.6 76 73.7
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 8.3e-22 110.2 87 63.2
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.4e-21 109.4 81 63.0
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 2.7e-20 105.1 90 56.7
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-18 99.8 103 52.4
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.6e-17 95.9 197 32.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.3e-14 86.3 330 25.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 4.9e-14 84.3 334 24.6
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 6.3e-14 84.0 329 25.2
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 3.1e-13 81.6 65 58.5
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.0e-12 79.0 318 25.2
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 5.9e-12 77.4 94 45.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 3.6e-09 68.2 320 23.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.0e-08 66.6 259 23.2
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.0e-08 66.6 313 25.6
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.2e-08 64.3 309 23.9
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.8e-08 63.9 305 24.6
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.5e-07 62.8 176 27.3
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.4e-07 61.6 226 23.9
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.4e-07 61.2 173 26.0
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 5.8e-07 60.8 213 25.8
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 5.8e-07 60.8 321 23.1
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 7.5e-07 60.5 222 24.3
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.2e-06 58.9 84 41.7
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.7e-06 58.2 298 25.8


User provided reference genes

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