Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 1.8e-97 359.4 195 100.0
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.7e-61 239.2 209 64.6
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 7.8e-61 237.7 211 63.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 1.0e-60 237.3 209 64.1
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 1.3e-60 236.9 211 62.6
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 5.0e-60 235.0 209 64.1
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 1.9e-59 233.0 210 61.0
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 1.9e-59 233.0 209 63.6
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 3.3e-59 232.3 210 62.9
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 3.3e-59 232.3 210 62.4
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 7.3e-59 231.1 209 64.6
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 1.2e-58 230.3 208 61.1
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 3.6e-58 228.8 209 61.7
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 3.6e-58 228.8 209 60.8
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 3.6e-58 228.8 209 63.2
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.1e-57 227.3 181 66.3
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 1.4e-57 226.9 209 60.8
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 4.0e-57 225.3 208 61.1
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 2.6e-56 222.6 209 61.2
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.6e-56 222.6 207 60.9
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 4.4e-56 221.9 206 59.7
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 5.8e-56 221.5 208 60.6
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 9.8e-56 220.7 181 64.1
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 1.7e-55 219.9 207 60.9
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 2.9e-55 219.2 209 60.3
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 4.9e-55 218.4 209 60.3
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 1.9e-54 216.5 209 59.8
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 3.2e-54 215.7 209 61.2
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 5.4e-54 214.9 210 57.6
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 7.0e-54 214.5 209 57.4
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 1.2e-53 213.8 183 62.8
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 1.6e-53 213.4 207 58.9
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 2.0e-53 213.0 212 56.6
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 3.5e-53 212.2 206 57.8
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 4.6e-53 211.8 209 56.5
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 7.8e-53 211.1 209 59.8
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.0e-52 210.7 205 56.1
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.7e-52 209.9 209 57.4
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 3.0e-52 209.1 209 56.9
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 8.6e-52 207.6 207 57.0
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 8.6e-52 207.6 183 62.3
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.5e-51 206.8 209 56.0
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 2.5e-51 206.1 206 56.8
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 3.3e-51 205.7 207 56.5
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 9.5e-51 204.1 179 63.1
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.2e-50 203.8 209 56.5
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 2.1e-50 203.0 209 56.9
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 6.2e-50 201.4 180 61.7
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 6.8e-49 198.0 209 55.5
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 5.8e-48 194.9 183 59.6
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 7.5e-48 194.5 207 55.1
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 1.7e-47 193.4 208 53.8
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 1.4e-46 190.3 208 52.9
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 4.1e-46 188.7 205 55.1
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.3e-44 183.7 182 56.6
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 4.3e-43 178.7 196 55.6
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 9.5e-43 177.6 168 59.5
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 4.7e-42 175.3 141 64.5
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 4.7e-42 175.3 207 52.2
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.2e-37 160.6 209 48.3
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 1.0e-36 157.5 207 48.3
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.2e-34 150.6 198 48.0
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 1.1e-33 147.5 195 47.7
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 5.4e-30 135.2 201 45.3
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 7.3e-27 124.8 172 43.0
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 3.5e-21 105.9 108 56.5
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 4.6e-21 105.5 106 54.7
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 4.6e-21 105.5 181 40.9
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 2.3e-20 103.2 106 53.8
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 6.9e-17 91.7 112 49.1
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 6.4e-15 85.1 80 52.5
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 7.1e-14 81.6 106 45.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.1e-10 70.1 54 66.7
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 1.8e-09 67.0 166 33.7
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 1.2e-08 64.3 116 35.3
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.5e-08 63.9 103 39.8
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 8.4e-07 58.2 107 37.4
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 8.4e-07 58.2 165 29.7


User provided reference genes

Program Settings