Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 9.2e-69 263.5 135 100.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.4e-53 211.1 130 83.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 7.0e-53 210.7 122 86.9
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.0e-52 209.1 120 87.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-52 209.1 130 82.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.5e-52 208.4 118 89.8
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 3.5e-52 208.4 122 86.1
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.0e-52 207.6 118 89.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 6.0e-52 207.6 124 84.7
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.8e-52 207.2 130 81.5
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 7.8e-52 207.2 124 84.7
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.0e-51 206.8 120 86.7
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.0e-51 206.8 120 86.7
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.0e-51 206.8 117 89.7
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.3e-51 206.5 122 83.6
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.3e-51 206.5 120 85.8
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.7e-51 206.1 117 89.7
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 2.3e-51 205.7 117 89.7
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.3e-51 205.7 117 88.9
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.3e-51 205.7 130 78.5
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.0e-51 205.3 116 90.5
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 3.0e-51 205.3 117 88.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 3.9e-51 204.9 119 87.4
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 3.9e-51 204.9 115 89.6
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 5.0e-51 204.5 117 88.9
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 6.6e-51 204.1 130 82.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.6e-51 203.8 120 86.7
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 8.6e-51 203.8 130 80.8
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.1e-50 203.4 117 88.0
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.1e-50 203.4 130 82.3
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.1e-50 203.4 122 82.8
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.5e-50 203.0 122 82.0
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.5e-50 203.0 120 85.0
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.5e-50 203.0 120 86.7
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.9e-50 202.6 120 86.7
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.5e-50 202.2 117 86.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.5e-50 202.2 118 85.6
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.5e-50 202.2 122 83.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.5e-50 202.2 122 82.0
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.5e-50 202.2 119 86.6
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.3e-50 201.8 120 86.7
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.3e-50 201.8 120 85.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 3.3e-50 201.8 125 82.4
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 3.3e-50 201.8 122 85.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 3.3e-50 201.8 119 86.6
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 4.3e-50 201.4 120 85.0
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 4.3e-50 201.4 120 83.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 5.6e-50 201.1 117 88.0
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 5.6e-50 201.1 122 82.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.6e-50 201.1 120 84.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.3e-50 200.7 119 84.9
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.3e-50 200.7 119 84.9
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 7.3e-50 200.7 119 84.0
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 7.3e-50 200.7 117 86.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.3e-50 200.7 114 89.5
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 9.5e-50 200.3 122 85.2
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 9.5e-50 200.3 119 85.7
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.5e-50 200.3 122 83.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.5e-50 200.3 122 83.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.2e-49 199.9 122 82.8
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-49 199.9 122 82.8
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.6e-49 199.5 120 83.3
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.6e-49 199.5 122 82.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.6e-49 199.5 122 82.0
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.1e-49 199.1 120 85.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.1e-49 199.1 124 83.9
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.8e-49 198.7 119 84.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.6e-49 198.4 118 84.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 4.7e-49 198.0 119 84.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 4.7e-49 198.0 120 83.3
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 6.2e-49 197.6 123 78.9
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 6.2e-49 197.6 123 78.9
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 6.2e-49 197.6 120 85.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 8.1e-49 197.2 117 82.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 8.1e-49 197.2 120 82.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 8.1e-49 197.2 133 77.4
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.1e-48 196.8 120 81.7
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.8e-48 196.1 132 77.3
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.8e-48 196.1 126 77.0
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.3e-48 195.7 124 80.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.3e-48 195.7 111 88.3
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.3e-48 195.7 124 79.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.3e-48 195.7 116 82.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.3e-48 195.7 122 79.5
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.1e-48 195.3 120 80.8
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.0e-48 194.9 120 80.8
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 5.2e-48 194.5 120 83.3
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.2e-47 193.4 120 82.5
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.2e-47 193.4 114 85.1
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.2e-47 193.4 143 72.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.5e-47 193.0 114 85.1
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.5e-47 193.0 114 85.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.5e-47 193.0 114 85.1
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.5e-47 193.0 114 85.1
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.5e-47 193.0 124 81.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.5e-47 193.0 114 86.8
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.6e-47 192.2 118 83.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 3.4e-47 191.8 114 84.2
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.4e-47 191.8 114 84.2
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 3.4e-47 191.8 112 85.7
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 3.4e-47 191.8 114 84.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.8e-47 190.3 119 79.0
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.3e-46 189.9 129 76.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-46 189.9 109 84.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.3e-46 189.9 106 91.5
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.7e-46 189.5 106 89.6
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.7e-46 189.5 138 73.2
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.7e-46 188.3 129 75.2
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.7e-46 188.3 129 75.2
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 6.4e-46 187.6 120 80.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.1e-45 186.8 116 78.4
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-45 186.4 120 80.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-45 186.4 120 80.0
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.4e-45 186.4 120 80.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.4e-45 185.7 117 76.9
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.4e-45 185.7 119 75.6
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.2e-45 183.7 115 77.4
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.6e-44 183.0 115 82.6
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.5e-44 181.8 119 75.6
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 6.0e-44 181.0 118 78.0
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.0e-44 181.0 137 70.8
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.0e-43 180.3 109 85.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.3e-43 179.9 106 86.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-43 179.5 141 68.8
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 3.0e-43 178.7 171 59.1
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 3.3e-42 175.3 117 78.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 4.3e-42 174.9 95 91.6
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 7.3e-42 174.1 96 90.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 9.5e-42 173.7 97 90.7
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.2e-41 173.3 100 87.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.6e-41 172.9 115 77.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.6e-41 172.9 102 86.3
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.8e-41 172.2 93 93.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 3.6e-41 171.8 99 89.9
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 4.7e-41 171.4 107 83.2
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 6.2e-41 171.0 106 82.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.4e-40 169.9 100 85.0
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.1e-40 168.7 95 89.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 6.8e-40 167.5 111 74.8
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.2e-39 166.8 90 91.1
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.5e-39 166.4 108 80.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.6e-39 165.6 142 64.1
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.1e-37 160.2 99 80.8
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.4e-37 159.8 110 74.5
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 7.8e-36 154.1 139 62.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 6.6e-35 151.0 135 63.7
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.2e-30 136.0 104 69.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 3.8e-30 135.2 75 88.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 6.4e-30 134.4 90 78.9
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 7.1e-29 131.0 97 71.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.1e-27 124.8 70 87.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.3e-26 122.1 119 58.8
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.6e-25 119.8 123 59.3
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.3e-22 110.2 62 91.9
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.9e-22 108.2 100 65.0
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.5e-20 102.1 108 51.9
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.0e-19 100.5 90 55.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.1e-18 97.1 98 59.2
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 4.3e-18 95.1 52 88.5
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.6e-17 93.2 98 58.2
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.2e-13 79.0 51 76.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.5e-13 78.2 53 73.6
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.1e-12 76.3 78 51.3
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.7e-09 65.5 72 54.2
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.5e-07 58.5 57 61.4


User provided reference genes

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