Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 3.8e-285 984.2 499 100.0
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 9.4e-127 458.0 510 52.0
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 1.4e-125 454.1 504 52.2
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 2.5e-124 449.9 506 50.0
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 9.7e-124 448.0 506 50.0
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 8.2e-123 444.9 502 50.6
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 1.5e-121 440.7 509 51.1
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 2.6e-121 439.9 502 49.6
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 3.4e-121 439.5 504 49.6
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 1.7e-120 437.2 509 50.9
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.7e-120 437.2 501 49.7
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 5.5e-119 432.2 503 48.9
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.6e-118 430.6 507 50.3
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.0e-117 427.9 515 50.7
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 3.9e-117 426.0 502 48.8
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 5.1e-117 425.6 500 49.6
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 2.6e-116 423.3 502 47.2
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 3.3e-116 422.9 514 47.9
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 4.4e-116 422.5 514 48.1
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 9.7e-116 421.4 509 48.9
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 2.2e-115 420.2 511 47.9
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 4.8e-115 419.1 515 48.7
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 8.2e-115 418.3 513 48.1
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 2.4e-114 416.8 510 46.7
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 3.1e-114 416.4 507 47.9
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 4.1e-114 416.0 486 47.3
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 2.6e-113 413.3 516 47.9
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 2.6e-113 413.3 486 46.7
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 4.5e-113 412.5 502 46.4
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 7.7e-113 411.8 511 49.7
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 1.3e-112 411.0 508 46.9
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 1.3e-112 411.0 505 48.3
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 3.8e-112 409.5 502 48.2
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.0e-112 409.1 486 46.7
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 1.1e-111 407.9 499 49.5
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 1.9e-111 407.1 517 47.4
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 2.5e-111 406.8 502 46.2
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 3.6e-110 402.9 502 48.2
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 2.3e-109 400.2 506 46.6
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 8.8e-109 398.3 497 46.7
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 1.5e-108 397.5 504 47.0
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 4.4e-108 396.0 507 45.6
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 3.7e-107 392.9 504 45.0
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 3.1e-106 389.8 445 46.7
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 4.5e-105 386.0 429 51.0
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 5.9e-105 385.6 523 45.1
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 1.7e-104 384.0 509 46.6
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 9.4e-103 378.3 507 45.6
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 9.4e-103 378.3 515 44.3
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 2.7e-102 376.7 508 45.7
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 3.6e-102 376.3 509 44.8
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 8.0e-102 375.2 515 43.1
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 2.6e-100 370.2 509 44.8
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 2.6e-100 370.2 522 44.1
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 1.3e-99 367.9 515 42.5
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 1.3e-99 367.9 509 43.0
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 1.7e-99 367.5 439 49.2
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 4.8e-99 365.9 434 48.8
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 8.3e-99 365.2 509 45.0
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 8.3e-99 365.2 512 42.6
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 5.4e-98 362.5 519 44.3
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 2.0e-97 360.5 510 44.5
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 3.8e-88 329.7 411 46.7
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.0e-88 329.3 411 46.5
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 6.1e-86 322.4 419 46.1
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 3.0e-85 320.1 418 47.4
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 3.7e-83 313.2 511 39.7
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 1.1e-79 301.6 412 44.4
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 1.5e-79 301.2 418 43.5
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 1.2e-78 298.1 422 43.4
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.1e-70 270.8 312 47.4
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 1.4e-69 268.1 555 35.1
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 8.3e-67 258.8 370 44.6
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 4.3e-63 246.5 455 36.5
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 1.5e-60 238.0 566 32.5
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 5.8e-60 236.1 232 55.6
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 1.3e-59 235.0 508 34.1
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 1.1e-47 195.3 476 34.2
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 8.4e-35 152.5 481 27.9
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.3e-32 145.2 159 50.3
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 5.3e-21 106.7 444 27.5
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 5.0e-19 100.1 114 51.8
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 1.9e-15 88.2 441 23.1
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 2.9e-11 74.3 212 29.2
SMO302G0010 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 6.7e-08 63.2 63 47.6
SMO353G0419 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 2.0e-07 61.6 97 39.2


User provided reference genes

Program Settings