Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 2.2e-263 911.8 465 100.0
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 7.5e-179 630.9 460 67.4
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 3.1e-172 609.0 460 65.2
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 2.6e-171 605.9 468 65.4
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 3.4e-171 605.5 460 65.0
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 7.8e-168 594.3 461 63.6
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.9e-167 592.0 464 62.3
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.1e-166 590.5 461 63.1
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.5e-166 589.3 464 62.3
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.1e-165 586.3 461 63.6
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 5.2e-164 581.6 465 61.7
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.5e-163 580.1 457 61.9
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.3e-162 577.0 461 61.2
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.3e-162 577.0 463 62.4
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.2e-162 576.2 460 61.5
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.9e-161 573.2 462 61.9
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.7e-160 569.3 461 60.3
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 5.1e-159 565.1 457 61.7
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 8.6e-159 564.3 461 61.8
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 8.6e-159 564.3 462 59.5
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.9e-158 563.1 462 61.5
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 5.6e-158 561.6 447 61.1
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.6e-157 560.1 467 61.5
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.6e-157 558.9 471 60.9
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.4e-156 557.0 463 59.8
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.4e-156 557.0 452 60.6
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 3.1e-156 555.8 465 59.4
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 5.2e-156 555.1 471 60.5
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 6.8e-156 554.7 496 57.5
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.2e-155 553.9 460 60.9
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.5e-155 553.5 464 58.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.6e-155 552.7 461 60.1
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 3.4e-155 552.4 513 55.2
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 5.8e-155 551.6 452 60.2
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 7.6e-155 551.2 463 59.8
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 9.9e-155 550.8 449 59.9
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.3e-154 550.4 429 64.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 2.2e-154 549.7 461 58.8
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.9e-154 549.3 463 60.0
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.9e-154 549.3 463 60.0
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 4.9e-154 548.5 462 59.3
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 6.4e-154 548.1 463 59.6
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 6.4e-154 548.1 452 59.3
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 3.2e-153 545.8 461 58.4
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 3.2e-153 545.8 454 59.0
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 3.2e-153 545.8 461 57.7
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 4.2e-153 545.4 463 59.6
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 2.1e-152 543.1 464 56.7
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.0e-151 540.8 466 58.6
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 3.9e-151 538.9 463 57.9
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 3.9e-151 538.9 461 58.1
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 5.1e-151 538.5 461 57.7
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.9e-150 536.6 466 57.9
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.5e-150 536.2 460 59.1
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.6e-149 533.5 462 57.1
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.1e-148 530.8 462 58.0
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.9e-148 528.1 466 58.4
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.2e-147 527.3 448 58.9
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 3.4e-147 525.8 465 55.9
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.4e-147 525.4 462 58.2
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.3e-146 523.9 463 58.1
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 6.4e-146 521.5 438 59.4
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 3.2e-145 519.2 464 56.0
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 4.2e-145 518.8 447 56.4
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.6e-144 516.9 456 55.5
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 2.7e-144 516.2 461 55.1
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 6.0e-144 515.0 469 57.4
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 7.9e-144 514.6 463 55.7
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 5.1e-143 511.9 464 56.9
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 8.7e-143 511.1 463 54.9
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.9e-142 510.0 465 58.1
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 2.8e-141 506.1 462 54.3
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 6.2e-141 505.0 454 56.2
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.4e-140 503.8 465 57.6
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 9.0e-140 501.1 462 53.9
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.2e-139 500.7 462 54.3
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-139 500.7 454 54.4
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 2.6e-139 499.6 465 54.8
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.4e-139 499.2 463 53.3
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 9.9e-139 497.7 450 54.4
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-138 496.5 450 54.4
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 4.9e-138 495.4 464 53.0
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.9e-138 495.4 433 57.3
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 6.4e-138 495.0 460 53.5
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 8.4e-138 494.6 464 53.2
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.4e-138 494.6 463 52.9
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.4e-137 493.0 464 53.0
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.4e-137 493.0 464 53.0
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.4e-137 493.0 433 56.8
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 6.0e-136 488.4 464 53.7
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 6.0e-136 488.4 460 53.3
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.3e-135 487.3 462 52.2
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 3.3e-134 482.6 462 55.6
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 8.4e-130 468.0 459 52.9
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 7.1e-129 464.9 491 51.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 9.6e-126 454.5 421 54.9
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 8.2e-125 451.4 457 52.3
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.0e-122 444.5 465 50.8
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.2e-122 443.4 489 49.1
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.6e-120 437.2 457 50.8
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 3.3e-118 429.5 467 51.2
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 7.4e-118 428.3 460 47.0
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 7.7e-115 418.3 452 47.6
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 2.5e-113 413.3 429 50.8
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 3.2e-105 386.3 294 62.2
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 4.5e-91 339.3 424 41.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.0e-87 326.6 365 46.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.0e-87 326.6 365 46.0
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 8.8e-87 325.1 488 38.7
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 9.8e-86 321.6 286 58.4
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.8e-85 320.1 470 38.1
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.6e-83 314.3 527 38.5
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 3.5e-75 286.6 369 43.6
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.6e-65 252.7 322 48.4
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 6.4e-61 239.2 512 32.8
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.7e-58 231.1 475 31.6
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 2.8e-48 197.2 388 33.0
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.1e-47 195.3 365 36.4
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 5.8e-46 189.5 192 51.0
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 9.2e-44 182.2 171 55.0
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 3.0e-42 177.2 171 53.2
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.2e-35 155.2 117 65.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.8e-32 144.1 124 51.6
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.8e-32 144.1 124 51.6
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 1.4e-31 141.7 125 55.2
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.8e-31 141.4 346 28.9
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.0e-31 140.2 121 51.2
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 4.5e-30 136.7 366 26.0
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 7.6e-30 136.0 215 40.9
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 7.1e-28 129.4 105 56.2
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.8e-26 124.8 455 24.0
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 6.7e-26 122.9 314 28.3
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 3.0e-18 97.4 120 41.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.3e-16 92.0 171 35.1
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 2.0e-14 84.7 97 47.4
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 7.6e-14 82.8 97 46.4
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 4.2e-12 77.0 73 50.7
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.9e-10 70.5 72 48.6
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 6.3e-08 63.2 40 62.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 8.2e-08 62.8 39 64.1


User provided reference genes

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