Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 7.1e-312 1073.2 520 100.0
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 4.6e-270 934.1 520 84.8
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 7.9e-270 933.3 520 84.4
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.7e-256 889.0 518 80.1
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 2.1e-254 882.1 520 79.4
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.8e-253 879.0 520 79.0
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.3e-253 878.6 520 79.6
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 5.2e-253 877.5 520 78.3
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 6.3e-251 870.5 520 78.1
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.1e-250 869.8 521 78.3
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.8e-250 869.0 513 78.8
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.8e-250 869.0 513 78.6
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 2.4e-250 868.6 520 77.7
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 2.4e-250 868.6 516 78.7
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 3.1e-250 868.2 518 79.2
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 5.3e-250 867.5 520 79.2
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 5.3e-250 867.5 516 77.9
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.6e-249 865.1 515 78.3
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.0e-248 863.2 518 78.6
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 1.3e-248 862.8 520 76.7
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.9e-248 861.7 515 77.9
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 2.9e-248 861.7 520 77.3
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 6.5e-248 860.5 519 76.9
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.1e-247 859.8 513 77.6
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.5e-247 858.6 516 77.9
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 5.5e-247 857.4 520 76.3
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 5.5e-247 857.4 515 77.5
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 1.2e-246 856.3 516 77.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.6e-246 855.9 520 78.7
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 3.6e-246 854.7 520 76.9
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 4.7e-246 854.4 512 77.5
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.7e-246 854.4 538 74.7
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 6.1e-246 854.0 514 78.4
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.3e-245 852.0 516 76.0
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.2e-245 850.9 515 77.3
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 6.8e-245 850.5 520 76.3
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 6.8e-245 850.5 515 77.7
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 8.8e-245 850.1 521 76.8
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.5e-244 849.4 519 76.9
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 2.0e-244 849.0 516 76.9
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.0e-244 849.0 510 77.6
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 2.6e-244 848.6 521 76.4
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.6e-244 848.6 519 76.1
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.4e-244 848.2 549 74.3
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 3.4e-244 848.2 521 76.8
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 4.4e-244 847.8 521 76.8
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 4.4e-244 847.8 516 75.4
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 5.7e-244 847.4 520 76.5
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.7e-243 845.9 519 75.9
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.2e-243 845.5 520 76.0
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.2e-243 845.5 520 76.5
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 2.2e-243 845.5 521 76.8
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.8e-243 845.1 518 77.8
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.3e-243 843.6 519 75.7
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.4e-242 842.8 519 75.7
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.8e-242 842.4 521 75.8
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 3.1e-242 841.6 521 75.4
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 3.1e-242 841.6 521 75.4
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 3.1e-242 841.6 472 85.4
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.1e-242 841.3 520 75.4
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.1e-242 841.3 520 75.4
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 5.3e-242 840.9 521 75.6
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 5.3e-242 840.9 521 75.4
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.2e-241 839.7 521 74.7
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 2.0e-241 839.0 521 75.2
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 2.0e-241 839.0 521 75.2
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.0e-241 839.0 520 76.5
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.5e-241 838.2 518 75.3
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 4.5e-241 837.8 516 75.8
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 5.9e-241 837.4 520 76.3
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 7.7e-241 837.0 520 76.3
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 1.0e-240 836.6 521 74.9
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 1.0e-240 836.6 521 76.4
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 1.0e-240 836.6 526 75.7
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.0e-240 836.6 515 76.3
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 1.3e-240 836.3 516 75.6
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 6.5e-240 833.9 544 73.3
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 8.5e-240 833.6 515 75.5
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 1.5e-239 832.8 530 73.8
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.9e-239 832.4 530 74.0
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.9e-239 832.4 520 75.0
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 9.4e-239 830.1 520 77.3
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.6e-238 829.3 516 74.8
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.6e-238 829.3 516 74.8
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-238 828.9 519 75.1
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.7e-238 828.6 521 74.9
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 6.1e-238 827.4 519 75.0
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 8.0e-238 827.0 520 77.3
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 1.0e-237 826.6 517 74.9
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 2.3e-237 825.5 519 75.1
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 2.3e-237 825.5 519 75.1
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 8.8e-237 823.5 519 74.8
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 8.8e-237 823.5 519 73.0
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 8.8e-237 823.5 492 77.4
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 2.6e-236 822.0 517 75.4
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 3.7e-235 818.1 515 74.4
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 3.7e-235 818.1 522 73.2
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 6.3e-235 817.4 516 75.2
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 1.1e-234 816.6 520 74.6
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 2.4e-234 815.5 520 73.8
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 2.0e-233 812.4 513 74.1
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 4.5e-233 811.2 466 80.5
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 4.5e-233 811.2 522 72.8
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 3.8e-232 808.1 519 73.8
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 6.6e-232 807.4 519 73.2
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 6.6e-232 807.4 520 75.0
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.5e-231 806.2 466 79.8
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 1.9e-231 805.8 520 73.3
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 5.5e-231 804.3 521 73.1
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 1.2e-230 803.1 519 74.2
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 1.2e-230 803.1 519 70.9
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 2.1e-230 802.4 520 73.1
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.0e-229 798.5 518 73.4
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 8.9e-229 797.0 520 73.8
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.3e-227 793.1 511 72.8
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 1.4e-226 789.6 517 72.5
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.8e-226 789.3 520 71.5
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.4e-226 788.9 469 78.3
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 2.4e-226 788.9 517 72.3
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 4.5e-225 784.6 464 78.2
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 5.9e-225 784.3 550 70.4
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 5.0e-224 781.2 515 72.6
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 6.6e-224 780.8 468 77.1
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 6.6e-224 780.8 516 72.3
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 2.5e-223 778.9 465 78.1
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 9.5e-223 776.9 553 68.2
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 1.2e-222 776.5 520 71.7
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.6e-222 775.0 490 74.9
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.3e-221 772.3 520 71.3
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.2e-220 770.0 568 65.8
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 2.9e-219 765.4 519 70.5
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.4e-218 763.1 470 75.5
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 1.4e-213 746.5 561 66.5
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 3.4e-212 741.9 520 70.0
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.1e-210 736.9 513 70.6
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.4e-210 736.5 520 68.8
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 6.6e-208 727.6 518 66.8
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 4.0e-205 718.4 540 63.7
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 2.2e-203 712.6 519 67.8
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 4.9e-203 711.4 520 66.5
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 4.7e-198 694.9 502 69.3
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 8.4e-187 657.5 380 80.8
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.1e-183 647.1 373 79.4
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 1.9e-183 646.4 486 65.8
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 8.4e-179 630.9 382 77.0
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 2.3e-176 622.9 480 64.2
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 3.7e-174 615.5 561 57.2
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 7.6e-172 607.8 481 60.9
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.9e-170 603.2 446 63.5
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 3.8e-155 552.4 473 56.9
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 3.0e-152 542.7 519 52.4
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.3e-139 500.7 352 68.2
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.8e-128 463.8 284 76.4
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 2.3e-128 463.4 293 74.7
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 4.0e-128 462.6 289 77.5
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 4.4e-127 459.1 291 73.9
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.4e-125 454.1 288 74.3
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 5.4e-125 452.2 264 78.4
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.8e-104 384.0 250 71.6
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.2e-97 361.3 244 71.3
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.4e-78 295.8 199 69.8
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 4.5e-55 219.9 515 30.1
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 2.2e-54 217.6 133 71.4
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 2.9e-54 217.2 490 31.8
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.2e-41 174.5 203 48.8
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 6.1e-36 156.4 134 55.2
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 1.3e-33 148.7 109 62.4
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 2.6e-26 124.4 86 68.6
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 7.2e-21 106.3 59 78.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.8e-19 101.7 142 46.5
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 8.8e-19 99.4 59 74.6
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.7e-17 95.1 149 36.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.3e-11 74.7 175 37.1
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.2e-07 62.4 37 73.0
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 4.5e-07 60.5 76 43.4


User provided reference genes

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