Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.6e-87 324.3 172 100.0
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 5.9e-20 101.7 209 44.5
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.5e-18 96.3 211 41.7
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 9.4e-18 94.4 210 41.9
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 9.4e-18 94.4 204 38.7
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.6e-17 93.6 201 39.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.9e-16 89.0 185 41.1
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.5e-15 87.0 207 44.0
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.5e-15 87.0 215 37.7
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.0e-15 86.7 204 40.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.0e-15 86.7 204 40.2
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 2.0e-15 86.7 213 38.5
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 2.6e-15 86.3 216 38.0
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.6e-15 86.3 209 41.1
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.6e-15 86.3 199 38.7
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.4e-15 85.5 209 40.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 5.7e-15 85.1 198 38.4
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 7.4e-15 84.7 203 36.5
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 9.7e-15 84.3 209 40.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.7e-15 84.3 200 38.5
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 9.7e-15 84.3 201 37.8
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.3e-14 84.0 208 37.5
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.3e-14 84.0 193 39.9
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.7e-14 83.6 193 39.9
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-14 83.6 209 40.2
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.7e-14 83.6 213 35.2
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 2.2e-14 83.2 191 39.8
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.2e-14 83.2 208 41.3
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.8e-14 82.8 207 36.2
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.8e-14 82.8 207 37.7
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-14 82.4 193 39.4
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.7e-14 82.4 192 37.5
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 4.8e-14 82.0 210 40.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 4.8e-14 82.0 205 38.5
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 8.2e-14 81.3 231 40.3
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.2e-14 81.3 220 40.0
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 8.2e-14 81.3 204 40.2
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.4e-13 80.5 205 37.6
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.4e-13 80.5 214 40.2
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.8e-13 80.1 211 39.3
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-13 79.7 192 37.5
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.4e-13 79.7 192 37.5
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.4e-13 79.7 220 39.5
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.4e-13 79.7 215 39.1
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 4.1e-13 79.0 203 45.3
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 6.9e-13 78.2 178 40.4
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.9e-13 78.2 207 38.2
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 6.9e-13 78.2 187 45.5
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 9.1e-13 77.8 192 37.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 9.1e-13 77.8 206 35.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 9.1e-13 77.8 208 37.5
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 9.1e-13 77.8 203 42.4
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 9.1e-13 77.8 217 39.2
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 9.1e-13 77.8 212 39.6
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.2e-12 77.4 185 40.0
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.2e-12 77.4 212 37.7
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.2e-12 77.4 200 36.5
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.2e-12 77.4 197 37.6
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-12 77.0 192 37.0
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.5e-12 77.0 193 40.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.5e-12 77.0 208 38.9
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.5e-12 77.0 164 43.3
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.5e-12 77.0 185 40.0
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.0e-12 76.6 189 37.6
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-12 76.3 207 33.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 2.6e-12 76.3 189 37.6
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 2.6e-12 76.3 189 37.6
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 2.6e-12 76.3 203 36.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.6e-12 76.3 199 36.7
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.6e-12 76.3 207 36.2
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-12 75.9 189 37.0
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.4e-12 75.9 190 37.4
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.4e-12 75.9 190 37.4
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 4.5e-12 75.5 214 39.7
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 7.7e-12 74.7 171 42.7
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.7e-12 74.7 206 35.9
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 7.7e-12 74.7 187 42.2
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.7e-12 74.7 187 38.5
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 7.7e-12 74.7 202 42.6
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.0e-11 74.3 206 36.4
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.3e-11 73.9 206 36.9
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.3e-11 73.9 203 41.4
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.7e-11 73.6 214 36.4
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.7e-11 73.6 202 37.6
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.7e-11 73.6 193 37.8
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.2e-11 73.2 160 38.8
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.2e-11 73.2 153 37.9
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.9e-11 72.8 166 42.8
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.8e-11 72.4 179 38.5
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 5.0e-11 72.0 181 36.5
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 5.0e-11 72.0 197 38.6
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.0e-11 72.0 204 36.8
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 5.0e-11 72.0 211 34.6
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.5e-11 71.6 177 37.3
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.1e-10 70.9 204 35.3
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.1e-10 70.9 212 35.4
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 1.1e-10 70.9 201 39.3
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.4e-10 70.5 207 37.2
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.4e-10 70.5 209 35.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.9e-10 70.1 206 35.4
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 4.2e-10 68.9 235 31.5
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 4.2e-10 68.9 167 38.9
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.5e-10 68.6 198 38.9
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 5.5e-10 68.6 203 38.9
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 7.2e-10 68.2 197 34.0
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.2e-10 68.2 199 36.2
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 7.2e-10 68.2 158 38.0
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 9.4e-10 67.8 183 39.3
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.2e-09 67.4 217 37.8
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.2e-09 67.4 165 40.0
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.2e-09 67.4 212 38.2
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.6e-09 67.0 189 39.7
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.1e-09 66.6 200 37.5
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.1e-09 66.6 203 35.0
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.7e-09 65.5 209 34.4
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 4.7e-09 65.5 201 35.3
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 6.1e-09 65.1 150 36.7
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 8.0e-09 64.7 151 36.4
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 8.0e-09 64.7 200 36.0
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 8.0e-09 64.7 205 31.7
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.0e-08 64.3 128 41.4
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.0e-08 64.3 178 34.3
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.4e-08 63.9 181 38.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.4e-08 63.9 208 37.0
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.4e-08 63.9 109 41.3
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.8e-08 63.5 205 37.1
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.8e-08 63.5 193 34.2
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-08 63.2 156 38.5
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 2.3e-08 63.2 171 37.4
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 3.9e-08 62.4 208 32.7
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 5.2e-08 62.0 171 33.3
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.1e-07 60.8 172 40.7
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-07 60.8 153 37.9
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.5e-07 60.5 193 35.2
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.5e-07 60.5 151 39.7
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.5e-07 60.5 123 40.7
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 2.0e-07 60.1 192 33.3
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 3.3e-07 59.3 155 32.3
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 3.3e-07 59.3 143 34.3
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 5.7e-07 58.5 159 36.5
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 5.7e-07 58.5 159 36.5
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.7e-07 58.5 128 41.4
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 5.7e-07 58.5 174 33.9
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 9.7e-07 57.8 193 31.6
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.3e-06 57.4 136 36.0
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.3e-06 57.4 174 36.8
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 2.2e-06 56.6 101 42.6
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.2e-06 56.6 80 55.0
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.2e-06 56.6 180 35.0
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 4.8e-06 55.5 209 34.9
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 6.3e-06 55.1 188 35.1
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 8.2e-06 54.7 116 35.3
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 8.2e-06 54.7 191 37.7
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 8.2e-06 54.7 190 31.6


User provided reference genes

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