Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 7.5e-89 330.5 165 100.0
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 8.3e-64 247.3 158 75.9
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 1.8e-63 246.1 158 75.9
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 2.4e-63 245.7 163 71.8
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 2.4e-63 245.7 158 75.3
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 4.1e-63 245.0 158 70.9
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 4.1e-63 245.0 158 70.9
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 5.4e-63 244.6 158 71.5
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 7.0e-63 244.2 159 73.0
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 1.2e-62 243.4 158 72.8
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.2e-62 243.4 156 74.4
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.6e-62 243.0 158 75.3
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 2.0e-62 242.7 156 73.7
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 2.7e-62 242.3 158 72.2
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 4.6e-62 241.5 158 73.4
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 5.9e-62 241.1 157 73.2
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.0e-61 240.4 158 71.5
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 1.3e-61 240.0 158 69.6
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 2.3e-61 239.2 159 69.8
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 2.3e-61 239.2 158 71.5
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 3.0e-61 238.8 158 71.5
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 2.5e-60 235.7 158 70.3
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 4.3e-60 235.0 158 72.8
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 7.3e-60 234.2 153 73.9
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 7.3e-60 234.2 156 71.8
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 9.5e-60 233.8 158 70.3
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 1.2e-59 233.4 158 70.3
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 1.6e-59 233.0 158 69.6
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.6e-59 233.0 158 69.6
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 3.6e-59 231.9 157 71.3
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 1.0e-58 230.3 158 69.0
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.8e-58 229.6 156 71.2
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 1.8e-58 229.6 158 70.3
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 3.1e-58 228.8 160 70.6
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 4.0e-58 228.4 184 61.4
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 8.9e-58 227.3 156 68.6
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 2.0e-57 226.1 156 67.9
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 2.6e-57 225.7 157 68.2
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 2.6e-57 225.7 158 68.4
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 2.6e-57 225.7 156 69.2
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 3.4e-57 225.3 156 70.5
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 3.4e-57 225.3 156 68.6
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 7.5e-57 224.2 158 65.8
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 9.8e-57 223.8 156 67.9
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 9.8e-57 223.8 155 67.1
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 1.3e-56 223.4 158 65.2
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 2.2e-56 222.6 158 68.4
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 2.2e-56 222.6 158 66.5
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 2.9e-56 222.2 156 67.9
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 3.7e-56 221.9 158 67.1
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 6.4e-56 221.1 156 67.9
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.1e-55 220.3 158 66.5
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.9e-55 219.5 160 69.4
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 2.4e-55 219.2 157 65.6
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 3.2e-55 218.8 151 70.2
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 3.2e-55 218.8 156 67.3
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.2e-55 218.8 158 65.8
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 3.2e-55 218.8 157 66.9
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 4.1e-55 218.4 158 65.2
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 5.4e-55 218.0 156 65.4
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 9.2e-55 217.2 156 67.3
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.6e-54 216.5 156 64.7
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 1.6e-54 216.5 156 66.7
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 2.0e-54 216.1 157 65.0
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 2.7e-54 215.7 156 64.7
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 2.7e-54 215.7 156 64.7
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 3.5e-54 215.3 157 63.1
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 7.8e-54 214.2 155 66.5
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 1.7e-53 213.0 156 64.1
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 1.1e-52 210.3 157 64.3
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 1.5e-52 209.9 157 64.3
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 9.5e-52 207.2 156 62.8
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 2.1e-51 206.1 157 63.7
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.8e-50 203.0 158 58.9
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 4.0e-50 201.8 156 60.3
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 2.2e-48 196.1 187 53.5
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.9e-48 195.7 157 63.1
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.1e-47 193.7 130 70.8
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 7.1e-47 191.0 158 56.3
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 9.2e-47 190.7 157 61.1
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.7e-46 189.1 135 65.9
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 3.3e-44 182.2 127 68.5
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 3.3e-44 182.2 127 68.5
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 4.0e-42 175.3 158 55.7
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 2.1e-38 162.9 160 49.4
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 5.2e-34 148.3 130 52.3
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.5e-33 146.7 159 48.4
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 3.4e-33 145.6 109 62.4
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.4e-31 140.2 155 46.5
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 7.1e-31 137.9 110 61.8
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 2.1e-27 126.3 152 40.1
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 2.8e-27 125.9 158 44.3
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.4e-26 122.9 65 86.2
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.2e-25 120.6 162 42.0
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 2.0e-25 119.8 85 64.7
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 7.6e-25 117.9 151 39.1
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.1e-23 114.0 85 71.8
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 9.3e-23 110.9 91 57.1
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 1.8e-21 106.7 88 61.4
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 6.7e-21 104.8 91 57.1
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 2.5e-20 102.8 157 40.8
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 6.4e-16 88.2 91 42.9
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 8.4e-16 87.8 108 50.9
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 1.2e-14 84.0 162 35.8
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 4.6e-14 82.0 63 60.3
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.3e-12 75.9 77 53.2
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 4.3e-12 75.5 60 61.7
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 1.6e-11 73.6 41 78.0
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 1.7e-08 63.5 45 64.4
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 4.6e-06 55.5 70 41.4


User provided reference genes

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