Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.3e-95 352.4 206 100.0
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 9.1e-68 260.8 140 95.0
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 6.3e-37 158.3 142 63.4
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.0e-34 151.0 139 59.0
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 3.8e-34 149.1 141 58.2
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 6.5e-34 148.3 144 58.3
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.5e-33 147.1 135 60.0
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 1.5e-33 147.1 135 59.3
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 1.9e-33 146.7 144 58.3
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 5.5e-33 145.2 106 68.9
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 1.2e-32 144.1 125 59.2
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 2.1e-32 143.3 142 58.5
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.1e-32 143.3 138 56.5
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 6.1e-32 141.7 153 56.9
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.5e-30 137.1 139 54.0
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 4.4e-30 135.6 150 54.0
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 9.8e-30 134.4 140 55.7
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 8.3e-29 131.3 142 55.6
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.8e-28 130.2 124 57.3
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 5.4e-28 128.6 129 55.8
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 2.7e-27 126.3 127 53.5
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 3.5e-27 125.9 131 53.4
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 5.9e-27 125.2 148 53.4
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 5.9e-27 125.2 153 52.9
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 5.9e-27 125.2 153 52.9
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.0e-26 124.4 138 51.4
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.0e-26 124.4 129 52.7
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.3e-26 123.2 122 52.5
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 5.0e-26 122.1 138 50.0
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 5.0e-26 122.1 138 50.0
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 8.6e-26 121.3 127 52.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.5e-25 120.6 129 50.4
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 1.5e-25 120.6 137 51.1
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 2.5e-25 119.8 141 48.9
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 2.5e-25 119.8 131 54.2
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.3e-25 119.4 138 49.3
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 3.3e-25 119.4 143 48.3
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 4.3e-25 119.0 146 47.9
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 5.6e-25 118.6 135 50.4
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 9.5e-25 117.9 137 51.1
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.2e-24 117.5 129 49.6
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.6e-24 117.1 140 52.1
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.6e-24 117.1 137 49.6
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.1e-24 116.7 101 62.4
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 2.1e-24 116.7 101 63.4
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 2.1e-24 116.7 110 58.2
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 3.6e-24 115.9 153 45.8
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 3.6e-24 115.9 137 46.7
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 3.6e-24 115.9 135 48.9
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.7e-24 115.5 135 50.4
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 4.7e-24 115.5 139 50.4
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 4.7e-24 115.5 134 52.2
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 6.1e-24 115.2 101 57.4
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 8.0e-24 114.8 104 64.4
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 2.3e-23 113.2 139 47.5
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 3.0e-23 112.8 125 50.4
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 4.0e-23 112.5 139 46.8
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 5.2e-23 112.1 148 48.0
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 6.8e-23 111.7 152 46.1
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 8.9e-23 111.3 139 48.9
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.5e-22 110.5 101 58.4
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 2.0e-22 110.2 144 47.2
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.0e-22 110.2 120 55.0
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 2.0e-22 110.2 138 50.0
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 2.6e-22 109.8 144 47.2
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 5.8e-22 108.6 153 45.1
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 7.5e-22 108.2 100 56.0
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 9.8e-22 107.8 136 49.3
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.3e-21 107.5 138 50.7
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.7e-21 107.1 135 52.6
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 2.9e-21 106.3 138 50.7
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.1e-20 104.4 118 52.5
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 1.1e-20 104.4 127 49.6
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 1.8e-20 103.6 140 47.9
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 2.4e-20 103.2 135 46.7
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 2.4e-20 103.2 107 51.4
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 3.2e-20 102.8 139 46.0
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 1.2e-19 100.9 137 46.0
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 1.2e-19 100.9 140 45.0
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 4.6e-19 99.0 130 48.5
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.0e-18 97.8 143 42.7
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 3.9e-18 95.9 109 49.5
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 3.9e-18 95.9 145 42.1
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 6.6e-18 95.1 134 43.3
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 6.6e-18 95.1 134 43.3
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 1.9e-17 93.6 132 43.2
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 1.9e-17 93.6 132 43.2
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 4.3e-17 92.4 147 39.5
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 7.3e-17 91.7 132 42.4
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.2e-16 90.9 135 41.5
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 6.2e-16 88.6 135 41.5
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.1e-15 87.8 140 40.7
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 5.8e-14 82.0 105 44.8
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 9.8e-14 81.3 144 41.7
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.7e-13 80.5 141 41.8
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.4e-12 76.6 134 38.1
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.5e-09 67.4 136 39.0
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.8e-08 63.2 134 36.6
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.8e-08 63.2 134 36.6
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 1.8e-07 60.5 69 44.9
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 4.0e-07 59.3 161 31.1
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 5.2e-07 58.9 153 31.4
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.4e-06 56.2 110 36.4


User provided reference genes

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