Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.1e-113 413.7 269 100.0
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.8e-84 316.6 263 81.0
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.0e-82 310.8 263 81.0
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.4e-82 307.8 266 65.0
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.9e-81 306.6 263 63.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.2e-80 303.9 263 81.4
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 7.9e-80 301.2 265 60.0
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.0e-79 300.8 265 60.4
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 3.0e-79 299.3 266 68.4
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.7e-79 297.7 294 64.3
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 8.7e-79 297.7 264 64.4
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.5e-78 297.0 257 67.3
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.5e-78 296.2 240 67.9
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.3e-78 295.8 266 59.8
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 4.3e-78 295.4 263 76.4
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 5.7e-78 295.0 247 68.0
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 5.7e-78 295.0 266 59.8
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 9.6e-78 294.3 264 59.1
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 9.6e-78 294.3 266 59.8
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.6e-77 293.5 265 59.2
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 2.1e-77 293.1 278 57.2
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 2.8e-77 292.7 265 59.2
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.7e-77 292.4 295 64.1
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.7e-77 292.4 252 61.1
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.1e-76 290.8 249 60.6
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.1e-76 290.8 265 57.7
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.1e-76 290.8 278 56.8
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.1e-76 290.8 268 58.2
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.4e-76 290.4 265 59.2
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.4e-76 290.4 278 56.8
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 2.4e-76 289.7 265 58.9
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.1e-76 289.3 251 61.4
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 9.0e-76 287.7 257 66.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.2e-75 287.3 265 59.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.2e-75 287.3 276 58.0
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.2e-75 287.3 267 59.2
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.0e-75 286.6 252 59.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.4e-75 285.8 258 59.7
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.3e-74 283.9 242 61.6
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.2e-74 283.1 241 61.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 3.8e-74 282.3 248 79.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 6.5e-74 281.6 259 57.1
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 6.5e-74 281.6 265 57.0
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 8.5e-74 281.2 247 59.5
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.4e-73 280.4 265 64.5
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 2.5e-73 279.6 238 60.1
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.5e-73 279.6 264 56.1
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 7.9e-72 274.6 246 57.7
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 7.9e-72 274.6 246 57.3
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.0e-71 274.2 282 55.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.3e-71 273.9 247 58.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.3e-71 273.9 268 55.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.3e-71 273.9 244 58.2
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.3e-71 273.1 242 58.3
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.0e-71 272.7 251 55.8
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.9e-71 272.3 247 58.7
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.9e-71 272.3 265 55.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 3.9e-71 272.3 265 55.8
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 3.9e-71 272.3 231 60.6
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 5.1e-71 271.9 246 56.9
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-71 271.2 265 55.1
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.1e-70 270.8 268 56.3
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.5e-70 270.4 266 69.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.9e-70 270.0 298 51.3
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-70 270.0 265 55.1
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.9e-70 270.0 254 59.1
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 3.3e-70 269.2 244 57.0
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.3e-70 269.2 267 53.6
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 7.4e-70 268.1 267 53.6
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 7.4e-70 268.1 267 53.6
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 7.4e-70 268.1 265 55.5
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 9.7e-70 267.7 243 56.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 9.7e-70 267.7 243 56.8
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 6.3e-69 265.0 265 57.7
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.1e-68 264.2 284 52.8
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.4e-68 263.8 269 53.2
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.8e-68 263.5 269 54.3
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.8e-68 263.5 264 53.8
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 3.1e-68 262.7 265 53.2
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 4.1e-68 262.3 268 73.1
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.1e-68 262.3 264 54.2
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.2e-67 260.8 263 52.5
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.2e-67 260.8 263 52.5
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 2.6e-67 259.6 247 54.3
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 2.6e-67 259.6 240 58.3
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.0e-66 257.7 266 53.8
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.2e-66 256.5 284 50.7
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.4e-65 253.8 268 53.0
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.9e-65 253.4 267 62.5
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 9.4e-65 251.1 267 52.8
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 9.4e-65 251.1 267 58.1
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 4.6e-64 248.8 243 55.1
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.0e-63 247.7 262 52.3
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.4e-63 247.3 154 79.9
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 5.7e-62 241.9 243 53.1
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 9.7e-62 241.1 240 54.6
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.8e-61 239.6 254 50.8
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.6e-59 233.0 134 82.1
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.4e-59 232.6 234 53.4
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 5.9e-59 231.9 270 47.8
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 6.5e-58 228.4 134 80.6
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 7.2e-57 224.9 265 47.5
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 2.3e-55 219.9 294 54.4
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.5e-54 217.2 265 46.4
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-49 201.1 201 53.7
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.9e-49 200.3 273 42.1
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 6.7e-47 191.8 216 69.4
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.7e-45 187.2 278 42.4
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 8.2e-45 184.9 234 47.4
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-34 150.2 85 82.4
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.5e-30 137.5 226 45.6
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.1e-28 131.3 160 47.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 3.1e-28 129.8 145 50.3
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 9.2e-28 128.3 131 53.4
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.6e-27 127.5 76 80.3
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.6e-24 117.5 134 48.5
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.5e-22 110.9 149 43.0
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.4e-22 109.8 72 72.2
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 9.8e-22 108.2 164 42.7
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.2e-16 89.0 160 37.5
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.8e-14 82.4 73 58.9
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.7e-13 80.9 39 89.7
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.3e-09 66.6 60 51.7
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 4.3e-09 66.2 148 32.4
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 7.3e-09 65.5 58 53.4
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 4.7e-08 62.8 36 80.6
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 4.7e-08 62.8 36 80.6
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 8.9e-07 58.5 98 36.7
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 2.6e-06 57.0 40 62.5
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 5.8e-06 55.8 60 46.7
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 7.5e-06 55.5 58 50.0


User provided reference genes

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