Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 4.2e-175 617.8 298 100.0
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.2e-116 423.7 276 72.1
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 6.6e-112 407.9 276 72.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.3e-111 405.6 272 70.2
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.6e-111 404.8 273 70.3
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.3e-110 403.7 294 67.3
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.8e-110 402.5 267 72.3
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 3.6e-110 402.1 273 70.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.6e-110 402.1 267 71.2
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 4.8e-110 401.7 267 71.5
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.4e-109 400.2 286 67.5
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.8e-109 399.8 267 70.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.4e-109 399.4 293 65.5
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.0e-108 396.4 257 72.8
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.6e-108 396.0 276 68.8
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.6e-108 396.0 267 70.8
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 5.8e-108 394.8 293 67.6
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 9.9e-108 394.0 292 65.8
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.7e-107 393.3 259 72.2
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.2e-107 392.9 258 72.9
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 3.8e-107 392.1 287 65.5
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.8e-107 392.1 296 65.5
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.9e-106 389.8 266 70.7
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.2e-106 389.0 264 72.0
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 5.4e-106 388.3 252 71.4
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 5.4e-106 388.3 252 71.4
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 5.4e-106 388.3 272 69.1
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 7.1e-106 387.9 256 71.1
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 7.1e-106 387.9 274 68.6
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 7.1e-106 387.9 275 69.1
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 9.3e-106 387.5 279 70.3
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.3e-106 387.5 288 66.3
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.3e-106 387.5 288 66.3
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.6e-105 386.7 285 65.6
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.6e-105 386.7 249 72.3
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.7e-105 386.0 272 68.4
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 4.6e-105 385.2 250 72.4
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 6.0e-105 384.8 264 69.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 6.0e-105 384.8 295 62.0
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 6.0e-105 384.8 268 68.7
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 7.9e-105 384.4 291 64.9
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.0e-104 384.0 257 70.4
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.0e-104 384.0 272 68.0
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.3e-104 383.6 288 63.9
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.7e-104 383.3 263 69.6
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 3.0e-104 382.5 266 68.0
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.6e-104 381.3 268 69.0
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.1e-103 380.6 291 64.6
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.5e-103 380.2 268 68.7
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.5e-103 379.4 262 70.2
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 2.5e-103 379.4 294 62.6
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.3e-103 379.0 256 69.9
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 4.3e-103 378.6 268 69.4
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 5.6e-103 378.3 271 67.5
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.6e-103 378.3 280 64.6
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 9.6e-103 377.5 290 63.1
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 3.6e-102 375.6 284 65.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.2e-102 374.8 289 63.7
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 6.2e-102 374.8 288 63.5
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.1e-101 374.0 273 66.3
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.4e-101 373.6 295 64.4
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.8e-101 373.2 268 67.9
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 4.0e-101 372.1 286 62.9
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 5.3e-101 371.7 276 64.5
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 6.9e-101 371.3 264 67.0
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.0e-100 369.8 256 68.8
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 5.8e-100 368.2 252 68.7
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 7.6e-100 367.9 263 65.8
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 7.6e-100 367.9 268 64.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 6.4e-99 364.8 237 71.3
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 6.4e-99 364.8 263 65.4
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 2.4e-98 362.8 273 65.2
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.2e-98 362.5 296 62.2
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 1.6e-97 360.1 250 68.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.7e-97 359.4 283 61.8
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 7.9e-97 357.8 295 61.0
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 1.0e-96 357.5 255 68.6
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 3.9e-96 355.5 245 70.6
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.5e-95 353.6 262 65.6
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 7.4e-95 351.3 241 70.5
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.4e-93 346.3 243 68.7
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.0e-91 340.9 243 69.1
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-91 340.9 272 63.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.2e-91 339.7 240 66.2
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 6.5e-91 338.2 222 73.4
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.4e-90 337.0 266 64.3
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 5.5e-90 335.1 216 73.1
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.6e-89 333.6 240 65.8
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.1e-89 333.2 233 69.1
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 3.5e-89 332.4 267 62.2
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.8e-88 330.1 283 56.9
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.3e-86 323.9 276 56.5
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.1e-85 318.9 286 54.5
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 9.0e-85 317.8 273 58.2
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 2.2e-83 313.2 387 44.2
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 5.0e-83 312.0 258 56.6
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.3e-78 297.4 256 57.8
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-76 290.4 253 56.5
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.0e-76 290.0 244 58.6
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.0e-75 287.7 266 55.3
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.7e-75 287.0 271 53.9
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 2.2e-75 286.6 244 58.2
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 2.2e-75 286.6 244 58.2
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 2.2e-75 286.6 244 58.2
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 5.0e-75 285.4 257 55.3
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.1e-74 284.3 256 55.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.4e-74 283.9 252 57.5
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-73 280.0 243 58.4
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.0e-72 277.7 243 57.6
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.8e-72 276.9 244 58.6
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.3e-72 276.6 188 68.1
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 3.9e-72 275.8 251 57.0
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 6.7e-72 275.0 252 52.0
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.5e-71 273.9 190 67.9
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 4.1e-69 265.8 226 58.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 3.2e-66 256.1 231 53.7
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 4.7e-65 252.3 222 58.6
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.0e-61 238.4 255 48.6
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 4.2e-58 229.2 230 49.6
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 8.0e-57 224.9 299 43.8
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 3.0e-56 223.0 170 64.1
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 4.5e-52 209.1 225 47.6
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.5e-50 203.4 234 45.7
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.2e-49 201.1 206 55.3
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.5e-39 167.5 139 61.2
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.0e-31 140.6 264 32.6
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 9.8e-31 138.3 86 79.1
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 2.5e-26 123.6 123 47.2
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.1e-25 120.6 162 39.5
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.6e-20 104.4 158 38.0
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 5.6e-18 95.9 142 37.3
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 8.1e-17 92.0 50 84.0
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 8.1e-17 92.0 78 55.1
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-13 81.3 81 54.3
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.9e-13 80.9 60 61.7
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 5.6e-10 69.3 51 58.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.6e-09 66.6 52 55.8
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 7.6e-07 58.9 244 27.5


User provided reference genes

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