Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.2e-308 1062.4 563 100.0
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.5e-202 709.9 554 70.6
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.9e-201 705.7 557 68.8
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 6.1e-199 698.0 555 69.2
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 9.1e-195 684.1 551 69.0
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 4.5e-186 655.2 553 66.2
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 5.9e-186 654.8 557 65.2
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.9e-185 652.5 549 64.7
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 6.5e-185 651.4 557 63.9
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.1e-184 650.6 552 64.3
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.1e-184 650.6 564 63.1
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.4e-184 650.2 547 65.3
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 4.2e-184 648.7 546 64.1
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 3.6e-183 645.6 558 63.4
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 6.7e-182 641.3 564 61.9
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 8.8e-182 641.0 565 63.4
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 7.4e-181 637.9 567 61.9
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.8e-179 633.3 565 61.4
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 4.1e-179 632.1 548 62.0
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 9.1e-179 630.9 565 61.6
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 9.1e-179 630.9 562 61.4
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 9.1e-179 630.9 568 61.8
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 9.1e-179 630.9 568 61.6
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.0e-177 627.5 545 61.8
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.2e-177 626.3 545 61.8
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.2e-177 626.3 568 61.1
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.5e-177 624.8 569 60.6
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.5e-176 623.6 553 60.9
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.9e-176 623.2 556 61.7
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 3.2e-176 622.5 560 61.8
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 4.2e-176 622.1 572 61.5
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 4.2e-176 622.1 552 61.4
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.5e-176 621.7 556 61.7
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 7.2e-176 621.3 557 60.9
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.6e-175 620.2 550 62.9
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 2.1e-175 619.8 548 59.9
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 8.0e-175 617.8 550 61.6
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 3.0e-174 615.9 561 61.5
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 5.2e-174 615.1 573 58.6
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.2e-173 614.0 555 61.6
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.2e-173 614.0 560 60.4
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 7.5e-173 611.3 568 61.6
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.3e-172 610.5 564 59.4
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.7e-172 610.1 558 61.5
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-172 609.4 576 58.5
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.4e-171 607.1 555 59.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-170 603.2 560 58.4
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 2.7e-170 602.8 561 58.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 7.7e-170 601.3 556 59.9
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 6.5e-169 598.2 559 59.9
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 8.5e-169 597.8 552 58.9
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.1e-168 597.4 553 59.5
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.5e-168 597.0 658 53.6
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 4.2e-168 595.5 560 58.9
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 4.7e-167 592.0 558 59.9
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 6.1e-167 591.7 555 58.2
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 6.1e-167 591.7 555 59.3
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 1.8e-166 590.1 559 57.8
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 4.0e-166 589.0 560 59.6
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 4.0e-166 589.0 559 57.6
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-165 587.0 576 57.3
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.5e-165 584.7 560 58.4
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 7.5e-165 584.7 557 58.0
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 3.7e-164 582.4 555 57.8
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.8e-164 582.0 576 56.9
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 4.8e-164 582.0 548 58.8
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.4e-163 579.7 557 58.3
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.1e-163 578.9 576 56.9
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 5.4e-163 578.6 555 58.2
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.9e-161 572.8 560 56.8
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 8.6e-161 571.2 557 59.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.5e-160 569.7 568 56.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 5.5e-160 568.5 551 56.3
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.2e-159 567.4 556 56.3
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.3e-158 563.1 552 56.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 8.9e-158 561.2 552 58.0
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 8.9e-158 561.2 588 54.1
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.2e-157 560.8 588 53.9
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.5e-157 560.5 552 56.2
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.6e-157 559.7 556 55.0
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.7e-156 557.0 566 55.3
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.2e-156 556.6 565 57.2
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 6.3e-156 555.1 566 55.1
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 4.1e-155 552.4 573 53.2
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 2.0e-154 550.1 560 54.1
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.3e-153 547.4 569 53.1
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 5.0e-153 545.4 573 53.1
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 6.6e-153 545.0 558 52.7
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 8.6e-153 544.7 565 56.5
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.5e-152 543.9 562 53.9
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 1.6e-151 540.4 567 52.7
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 5.8e-149 531.9 558 53.0
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 1.7e-148 530.4 558 52.9
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.7e-148 529.3 560 52.5
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 4.1e-147 525.8 557 52.8
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 1.2e-146 524.2 576 51.0
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.6e-146 523.9 569 51.8
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.6e-143 513.8 560 52.9
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.9e-140 503.1 477 58.9
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 4.3e-136 489.2 539 50.6
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 2.8e-135 486.5 408 66.4
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 7.6e-133 478.4 578 49.3
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 1.1e-126 458.0 554 46.9
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 2.6e-125 453.4 558 49.3
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.8e-124 449.5 423 60.0
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.1e-122 443.7 421 58.4
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.3e-121 441.0 568 47.2
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 8.7e-121 438.3 548 48.5
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-117 427.6 499 50.3
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.2e-115 419.9 529 48.6
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 7.8e-114 415.2 557 42.5
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.7e-113 414.1 355 62.5
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 3.0e-113 413.3 554 43.3
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 5.6e-112 409.1 556 42.6
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-110 404.8 301 69.4
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.6e-109 400.2 550 43.3
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.4e-102 377.9 281 66.5
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 1.9e-91 340.9 383 49.3
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-80 305.1 465 42.8
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 5.3e-78 296.2 467 42.0
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 6.9e-78 295.8 334 54.2
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.6e-74 284.6 311 53.1
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.5e-72 278.1 585 36.6
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 3.0e-65 253.8 422 37.9
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.0e-65 253.4 225 60.4
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.7e-61 239.2 177 69.5
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.4e-54 218.4 156 69.9
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 7.7e-53 212.6 489 35.4
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.8e-49 199.1 248 47.2
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-42 178.3 154 61.7
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-41 175.6 138 63.8
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-39 167.9 310 39.4
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.7e-39 167.2 141 63.1
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-35 155.6 118 65.3
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-34 152.1 118 63.6
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 4.7e-34 150.2 146 52.1
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-27 125.9 177 45.8
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-23 114.8 86 68.6
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 9.2e-22 109.4 108 59.3
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-20 105.9 88 62.5
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.4e-16 90.5 105 46.7
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.2e-15 88.2 56 73.2
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-15 87.8 282 29.1
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 4.3e-11 73.9 43 79.1
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 5.6e-11 73.6 92 45.7
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-09 69.3 48 70.8
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 3.8e-07 60.8 52 61.5


User provided reference genes

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