Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005900 Simmondsia chinensis HOM05D039915 ORTHO05D002259 1.5e-112 409.5 199 100.0
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.4e-28 130.6 218 33.5
Sc02g0005440 Simmondsia chinensis HOM05D039915 ORTHO05D002259 2.2e-26 123.2 102 61.8
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 8.3e-26 121.3 218 29.8
Sc01g0004840 Simmondsia chinensis HOM05D000075 ORTHO05D002259 3.1e-25 119.4 88 67.0
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 1.6e-24 117.1 214 33.2
TWI34G1270 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 2.3e-23 113.2 217 33.2
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 7.5e-19 98.2 182 32.4
Hma1.2p1_1754F.1_g300945 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.7e-18 97.1 190 30.0
Sc01g0003770 Simmondsia chinensis HOM05D039915 ORTHO05D002259 3.7e-18 95.9 82 58.5
Hma1.2p1_0546F.1_g176250 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.0e-15 87.8 111 37.8
Atru.chr4.1942 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-15 85.1 216 25.0
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.2e-13 80.9 214 27.1
EL10Ac8g19409 Beta vulgaris HOM05D000003 ORTHO05D002259 1.6e-13 80.5 145 31.7
TWI14G0536 Tripterygium wilfordii HOM05D008457 ORTHO05D002259 2.1e-13 80.1 157 29.9
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-13 79.7 216 25.0
COL.COLO4_22852 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.6e-13 79.3 187 26.7
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 8.0e-13 78.2 194 28.4
EL10Ac1g00252 Beta vulgaris HOM05D000003 ORTHO05D002259 1.1e-12 77.8 147 29.3
Sc24g0002380 Simmondsia chinensis HOM05D003282 ORTHO05D003637 1.1e-12 77.8 83 42.2
TWI74G1163 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 1.4e-12 77.4 88 39.8
Atru.chr5.2369 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-12 76.6 216 25.0
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-12 75.9 216 25.0
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 6.8e-12 75.1 216 24.5
Sc10g0007930 Simmondsia chinensis HOM05D000003 ORTHO05D002259 8.9e-12 74.7 118 33.1
Hma1.2p1_0460F.1_g157390 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.2e-11 74.3 118 34.7
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 1.5e-11 73.9 216 25.0
Atru.chr13.1770 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-11 72.8 165 27.9
EL10Ac8g20331 Beta vulgaris HOM05D000003 ORTHO05D002259 3.4e-11 72.8 112 37.5
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.4e-11 72.8 156 32.7
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 4.4e-11 72.4 216 24.5
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 4.4e-11 72.4 166 27.7
Atru.chr3.3914 Acer truncatum HOM05D000003 ORTHO05D002259 5.8e-11 72.0 220 26.8
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 5.8e-11 72.0 168 26.2
TWI12G0813 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 5.8e-11 72.0 107 37.4
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-10 70.9 218 25.2
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-10 70.9 206 27.7
EL10Ac6g15220 Beta vulgaris HOM05D000003 ORTHO05D002259 3.7e-10 69.3 100 39.0
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-10 68.6 195 26.2
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 6.4e-10 68.6 199 24.1
Atru.chr6.413 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-09 67.8 221 26.2
Gohir.D06G188501 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.9e-09 67.0 212 26.4
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 2.4e-09 66.6 215 22.8
Duzib264G0111 Durio zibethinus HOM05D000003 ORTHO05D002259 3.2e-09 66.2 157 26.8
Thecc.08G107500 Theobroma cacao HOM05D000003 ORTHO05D002259 3.2e-09 66.2 183 26.8
Hma1.2p1_0719F.1_g208490 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.1e-09 65.9 158 27.8
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 9.2e-09 64.7 161 26.7
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-08 64.3 194 24.2
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-08 63.9 218 23.4
Atru.chr2.2465 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-08 63.9 155 25.8
Sc22g0002670 Simmondsia chinensis HOM05D000003 ORTHO05D002259 1.6e-08 63.9 55 50.9
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 2.0e-08 63.5 206 26.2
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 2.7e-08 63.2 201 25.9
Hma1.2p1_0704F.1_g206855 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.6e-08 62.4 116 37.1
Hma1.2p1_0704F.1_g206860 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.6e-08 62.4 116 37.1
Gorai.010G220900 Gossypium raimondii HOM05D014430 ORTHO05D002259 7.8e-08 61.6 212 26.4
BcaB01g00937 Brassica carinata HOM05D000003 ORTHO05D000004 1.0e-07 61.2 203 26.6
Atru.chr2.2598 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-07 60.8 199 21.6
Thecc.05G092100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-07 60.8 182 22.5
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-07 60.1 216 23.6
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 3.0e-07 59.7 161 24.8
Sc04g0007350 Simmondsia chinensis HOM05D000003 ORTHO05D002259 3.9e-07 59.3 113 31.9
Atru.chr11.2510 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-07 58.9 222 23.0
Hma1.2p1_0024F.1_g016160 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 6.6e-07 58.5 142 30.3
Gorai.012G040600 Gossypium raimondii HOM05D008457 ORTHO05D002259 8.6e-07 58.2 139 29.5
MBI15_g21039_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-07 58.2 204 26.5
Peaxi162Scf38623g00002 Petunia axillaris HOM05D000155 ORTHO05D000022 1.1e-06 57.8 61 44.3
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 57.4 205 24.4
Duzib248G0582 Durio zibethinus HOM05D008457 ORTHO05D013867 1.5e-06 57.4 144 28.5
Gohir.A06G181801 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.9e-06 57.0 201 26.4
Sc20g0003930 Simmondsia chinensis HOM05D000003 ORTHO05D002259 1.9e-06 57.0 69 36.2
Atru.chr8.877 Acer truncatum HOM05D000003 ORTHO05D002259 3.3e-06 56.2 221 23.1
MBI03_g40524_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-06 56.2 214 21.5
Thecc.02G058700 Theobroma cacao HOM05D000003 ORTHO05D002259 3.3e-06 56.2 83 31.3
FvH4_6g34981 Fragaria vesca HOM05D000003 ORTHO05D000022 4.3e-06 55.8 92 38.0
Hma1.2p1_0353F.1_g133190 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.3e-06 55.8 149 28.9
Sopen03g011360 Solanum pennellii HOM05D000155 ORTHO05D000022 4.3e-06 55.8 117 31.6
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 5.6e-06 55.5 204 24.5


User provided reference genes

Program Settings