Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 8.2e-160 567.0 287 100.0
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 8.1e-99 364.4 297 63.6
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.5e-97 360.1 300 64.0
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 7.6e-97 357.8 299 63.2
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 4.9e-96 355.1 290 61.7
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 6.4e-96 354.8 300 63.0
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.4e-95 353.6 274 65.3
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 3.2e-95 352.4 266 66.2
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.2e-95 352.4 266 66.2
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 3.5e-94 349.0 263 67.7
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 1.3e-93 347.1 294 62.2
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 1.7e-93 346.7 264 66.3
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 2.3e-93 346.3 300 59.7
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 6.6e-93 344.7 296 62.2
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 8.7e-93 344.4 265 66.4
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.5e-92 342.8 300 60.7
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 2.5e-92 342.8 264 64.8
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 2.5e-92 342.8 294 61.2
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 4.3e-92 342.0 302 60.3
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 5.6e-92 341.7 295 60.7
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 7.3e-92 341.3 302 59.3
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 9.6e-92 340.9 265 64.9
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 1.3e-91 340.5 291 61.5
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.6e-91 340.1 293 61.1
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.6e-91 340.1 265 63.0
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.8e-91 339.3 300 58.7
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 3.6e-91 339.0 305 59.3
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 4.8e-91 338.6 351 55.0
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 8.1e-91 337.8 264 64.8
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.4e-90 337.0 300 58.3
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 1.4e-90 337.0 296 60.8
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 5.3e-90 335.1 255 65.1
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 5.3e-90 335.1 293 58.7
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 6.9e-90 334.7 249 66.3
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.2e-89 334.0 297 59.9
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 5.8e-89 331.6 297 59.3
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 9.9e-89 330.9 292 61.0
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 4.9e-88 328.6 314 55.7
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 6.4e-88 328.2 293 57.0
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 2.4e-87 326.2 312 56.4
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.4e-87 326.2 303 55.8
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 5.4e-87 325.1 303 55.1
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 7.1e-87 324.7 297 56.2
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 9.3e-87 324.3 242 65.3
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 9.3e-87 324.3 257 63.8
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 2.7e-86 322.8 292 57.5
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 3.5e-86 322.4 296 58.1
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 3.9e-85 318.9 257 61.5
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 5.1e-85 318.5 267 58.1
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 6.7e-85 318.2 236 67.8
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 1.1e-84 317.4 296 58.8
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 1.1e-84 317.4 289 58.1
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 2.5e-84 316.2 269 58.0
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 5.6e-84 315.1 310 54.8
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.6e-83 313.5 272 56.6
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 2.1e-83 313.2 257 61.1
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 6.2e-83 311.6 296 56.1
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 8.1e-83 311.2 293 56.3
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.4e-82 310.5 246 63.4
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.4e-82 310.5 266 57.5
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 9.0e-82 307.8 289 55.7
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 2.0e-81 306.6 302 53.3
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 2.0e-81 306.6 297 54.2
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 2.0e-81 306.6 247 59.9
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 2.6e-81 306.2 288 56.2
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 2.6e-81 306.2 288 56.2
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 9.9e-81 304.3 260 58.8
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 1.7e-80 303.5 288 56.2
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 4.9e-80 302.0 295 57.3
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.5e-79 298.5 249 58.2
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 2.7e-78 296.2 297 53.5
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 6.0e-78 295.0 268 56.7
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 1.0e-77 294.3 310 52.6
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 1.0e-77 294.3 310 52.6
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 6.7e-77 291.6 271 55.0
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.1e-76 290.8 301 53.2
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 7.4e-76 288.1 288 54.2
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 1.3e-75 287.3 252 57.5
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.6e-75 287.0 265 56.6
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 2.1e-75 286.6 283 54.4
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 2.8e-75 286.2 288 54.5
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 9.0e-74 281.2 311 52.1
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 4.5e-73 278.9 240 59.2
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 5.8e-73 278.5 272 55.5
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 1.0e-72 277.7 303 50.2
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.0e-69 267.7 293 51.9
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 3.9e-69 265.8 293 51.5
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 5.7e-68 261.9 286 51.7
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 4.1e-66 255.8 245 55.1
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.3e-64 250.8 185 64.3
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.7e-64 250.4 185 64.9
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 8.2e-59 231.5 162 69.1
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 2.4e-58 229.9 298 45.6
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 2.4e-58 229.9 261 47.5
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.5e-57 227.3 180 59.4
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.9e-56 223.0 164 65.9
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 1.9e-55 220.3 193 57.0
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 1.0e-45 188.0 247 41.3
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.5e-44 184.1 209 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 7.0e-42 175.3 200 47.0
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 4.2e-39 166.0 149 57.0
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 2.1e-38 163.7 132 59.1
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 6.5e-32 142.1 185 48.1
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.3e-24 117.1 163 41.7
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.9e-15 87.4 100 47.0
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.6e-14 83.2 101 44.6
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 2.6e-12 77.0 245 29.4
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.7e-11 74.3 276 29.3
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 6.0e-09 65.9 53 52.8
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 3.9e-08 63.2 53 52.8
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 8.6e-08 62.0 207 26.6
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.6e-06 56.6 54 40.7


User provided reference genes

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