Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005650 Simmondsia chinensis HOM05D005809 ORTHO05D007259 4.9e-51 204.1 101 100.0
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 3.5e-12 75.1 50 74.0
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.3e-08 62.4 49 59.2
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 3.0e-08 62.0 63 52.4
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 3.0e-08 62.0 63 52.4
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 4.0e-08 61.6 48 60.4
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 5.2e-08 61.2 52 55.8
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 5.2e-08 61.2 49 57.1
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 6.7e-08 60.8 56 53.6
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 8.8e-08 60.5 56 53.6
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 8.8e-08 60.5 50 56.0
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 1.1e-07 60.1 50 56.0
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 1.1e-07 60.1 53 54.7
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 2.0e-07 59.3 50 58.0
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 3.3e-07 58.5 50 54.0
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 4.4e-07 58.2 50 56.0
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 4.4e-07 58.2 56 51.8
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 4.4e-07 58.2 51 58.8
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 4.4e-07 58.2 39 69.2
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 4.4e-07 58.2 50 56.0
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 5.7e-07 57.8 50 56.0
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 5.7e-07 57.8 50 54.0
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 5.7e-07 57.8 56 51.8
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 5.7e-07 57.8 50 56.0
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 5.7e-07 57.8 50 56.0
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 5.7e-07 57.8 49 55.1
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 5.7e-07 57.8 50 54.0
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 7.5e-07 57.4 60 46.7
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 7.5e-07 57.4 60 46.7
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 7.5e-07 57.4 52 59.6
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 9.7e-07 57.0 48 54.2
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 9.7e-07 57.0 48 52.1
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.3e-06 56.6 56 51.8
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 1.3e-06 56.6 50 54.0
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 1.3e-06 56.6 51 54.9
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.3e-06 56.6 52 51.9
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.3e-06 56.6 49 55.1
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.3e-06 56.6 57 49.1
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 1.7e-06 56.2 41 63.4
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 1.7e-06 56.2 41 63.4
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 1.7e-06 56.2 41 63.4
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 1.7e-06 56.2 50 52.0
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 1.7e-06 56.2 51 54.9
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.7e-06 56.2 51 52.9
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 1.7e-06 56.2 50 52.0
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.7e-06 56.2 50 54.0
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 1.7e-06 56.2 43 58.1
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.7e-06 56.2 46 58.7
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 1.7e-06 56.2 52 50.0
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.2e-06 55.8 50 54.0
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.2e-06 55.8 49 53.1
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.2e-06 55.8 49 53.1
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.2e-06 55.8 53 54.7
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.2e-06 55.8 48 52.1
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.2e-06 55.8 48 52.1
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 2.2e-06 55.8 48 52.1
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.2e-06 55.8 50 52.0
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 2.2e-06 55.8 50 50.0
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 2.2e-06 55.8 50 54.0
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 2.8e-06 55.5 48 52.1
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 2.8e-06 55.5 46 52.2
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 2.8e-06 55.5 53 54.7
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 2.8e-06 55.5 50 54.0
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 2.8e-06 55.5 50 50.0
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 2.8e-06 55.5 49 55.1
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 3.7e-06 55.1 39 66.7
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 3.7e-06 55.1 50 50.0
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 3.7e-06 55.1 50 52.0
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.7e-06 55.1 63 50.8
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 3.7e-06 55.1 50 50.0
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 4.8e-06 54.7 50 50.0
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 4.8e-06 54.7 50 48.0
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 4.8e-06 54.7 51 54.9
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 4.8e-06 54.7 50 50.0
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 4.8e-06 54.7 50 50.0
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 4.8e-06 54.7 50 54.0
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 4.8e-06 54.7 45 55.6
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 6.3e-06 54.3 39 64.1
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 8.2e-06 53.9 48 54.2
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 8.2e-06 53.9 47 53.2
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 8.2e-06 53.9 41 61.0
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 8.2e-06 53.9 50 52.0
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 8.2e-06 53.9 45 53.3


User provided reference genes

Program Settings