Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 0.0e+00 1216.1 631 100.0
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.3e-295 1019.2 642 81.6
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.7e-287 992.3 648 79.2
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.3e-271 938.7 642 76.3
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 5.1e-271 937.6 642 76.3
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 2.2e-258 895.6 653 73.8
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 7.1e-257 890.6 633 74.7
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 4.6e-256 887.9 658 71.3
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.3e-255 885.6 636 73.6
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 3.0e-255 885.2 658 71.4
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 6.7e-255 884.0 634 73.8
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.5e-254 882.9 636 73.4
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.9e-254 882.5 636 73.4
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.3e-254 881.7 639 74.5
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 5.7e-254 880.9 624 74.5
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.3e-253 879.8 625 73.4
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.2e-253 879.0 641 73.0
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 8.2e-253 877.1 636 73.4
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.8e-252 875.9 636 73.3
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 2.4e-252 875.5 655 70.8
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 6.9e-252 874.0 640 71.7
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 1.2e-251 873.2 631 73.4
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.0e-251 872.5 648 70.7
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.6e-251 872.1 636 73.4
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.5e-251 871.3 648 71.3
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-250 870.2 638 71.9
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-250 870.2 638 71.9
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.0e-250 870.2 648 71.1
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.0e-250 870.2 635 71.5
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.7e-250 869.4 633 71.2
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 2.2e-250 869.0 641 71.6
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.2e-250 869.0 646 71.4
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 3.8e-250 868.2 646 70.6
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 6.5e-250 867.5 646 71.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 8.5e-250 867.1 619 75.0
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 2.5e-249 865.5 646 71.8
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.2e-248 863.2 632 70.9
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.2e-248 863.2 618 74.3
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.6e-248 862.8 633 73.0
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.1e-248 862.4 647 70.8
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 3.6e-248 861.7 648 71.3
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 3.6e-248 861.7 647 70.8
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 7.9e-248 860.5 649 70.6
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.0e-247 860.1 649 69.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.8e-247 859.4 649 71.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 5.1e-247 857.8 649 70.9
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 1.1e-246 856.7 647 70.5
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 9.7e-246 853.6 645 69.5
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 1.3e-245 853.2 640 70.8
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 2.8e-245 852.0 647 70.9
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.1e-244 850.1 647 70.9
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 3.1e-244 848.6 629 72.3
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 5.3e-244 847.8 638 70.8
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 9.1e-244 847.0 646 69.8
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.0e-243 845.9 645 70.2
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 3.4e-243 845.1 649 69.6
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 5.0e-242 841.3 628 71.0
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 8.5e-242 840.5 632 71.5
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.9e-241 839.3 637 70.0
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 2.1e-240 835.9 645 69.1
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 2.1e-240 835.9 645 69.1
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 2.1e-240 835.9 645 69.1
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.0e-239 833.6 649 68.6
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.4e-239 833.2 630 71.1
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.8e-239 832.8 649 68.6
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 3.0e-239 832.0 650 68.9
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 5.1e-239 831.2 637 69.4
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.0e-238 829.3 649 68.7
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.0e-238 829.3 641 69.7
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 5.7e-238 827.8 650 68.5
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 5.7e-238 827.8 640 67.7
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.7e-238 827.8 634 70.3
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.4e-236 823.2 655 67.9
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.8e-236 822.8 641 68.6
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.4e-236 822.4 593 73.0
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 5.3e-236 821.2 650 68.0
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.5e-235 819.7 653 67.4
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 2.6e-235 818.9 659 67.4
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 2.2e-234 815.8 630 69.4
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 8.5e-234 813.9 653 67.4
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-233 813.1 656 66.9
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.4e-233 813.1 637 68.4
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.9e-233 812.8 653 67.2
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.2e-233 811.6 654 67.3
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 4.2e-233 811.6 653 66.6
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 4.2e-233 811.6 655 66.9
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 7.2e-233 810.8 652 66.6
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.6e-232 809.7 642 66.0
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 2.7e-232 808.9 657 66.7
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 3.6e-232 808.5 656 66.9
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 8.0e-232 807.4 662 66.2
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.0e-231 807.0 659 66.3
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 2.3e-231 805.8 635 69.6
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 5.2e-231 804.7 652 67.0
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.5e-230 803.1 649 68.1
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.3e-229 800.0 643 66.4
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 1.6e-227 793.1 646 66.4
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.3e-226 790.0 653 64.9
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.2e-226 789.3 632 66.0
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 9.4e-225 783.9 577 71.8
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.0e-223 780.4 657 65.3
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.3e-223 779.2 649 64.7
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 7.5e-222 774.2 631 64.8
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 3.8e-218 761.9 634 63.2
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.9e-217 759.6 635 62.8
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 3.6e-216 755.4 649 63.9
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-212 743.8 650 62.2
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 4.0e-207 725.3 615 66.0
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 3.4e-206 722.2 644 63.8
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 4.5e-203 711.8 641 59.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 6.1e-200 701.4 638 59.7
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 4.0e-199 698.7 529 71.1
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 7.5e-198 694.5 644 59.0
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.7e-197 692.2 647 58.6
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.2e-195 687.2 637 60.1
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-189 667.2 629 60.9
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.8e-187 657.9 628 59.7
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.2e-166 590.9 637 52.7
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.4e-166 589.0 539 61.8
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 2.9e-165 586.3 624 55.8
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.9e-153 547.0 658 48.5
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.3e-153 546.2 657 49.6
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 5.8e-142 508.8 616 50.8
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 7.4e-129 465.3 649 42.7
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 7.4e-113 412.1 318 69.8
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.2e-110 404.8 351 62.7
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 5.9e-94 349.4 381 51.2
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 1.9e-84 317.8 243 64.2
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.2e-70 271.9 305 53.1
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 6.9e-42 176.4 567 29.5
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.1e-39 169.1 115 78.3
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 4.6e-38 163.7 118 70.3
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.3e-21 109.0 114 57.0
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 5.1e-13 80.5 91 51.6
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.8e-11 74.7 100 45.0
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 2.2e-08 65.1 44 70.5
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.1e-06 58.5 49 57.1


User provided reference genes

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