Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 7.3e-104 380.6 193 100.0
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 2.2e-23 113.2 118 53.4
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 1.9e-19 100.1 192 39.6
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 2.8e-18 96.3 94 54.3
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 3.6e-18 95.9 90 60.0
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 1.4e-17 94.0 112 48.2
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 1.8e-17 93.6 167 43.7
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 3.1e-17 92.8 104 50.0
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.5e-16 90.5 199 38.7
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 1.5e-16 90.5 192 35.4
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 4.4e-16 89.0 141 42.6
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 7.5e-16 88.2 105 47.6
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.3e-15 87.4 147 44.9
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.7e-15 87.0 129 46.5
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 1.7e-15 87.0 91 52.7
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.7e-15 87.0 91 56.0
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.9e-15 86.3 175 39.4
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.7e-15 85.9 157 43.3
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 4.9e-15 85.5 105 47.6
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 6.4e-15 85.1 164 40.2
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 8.3e-15 84.7 164 40.9
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.4e-14 84.0 194 34.5
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 5.4e-14 82.0 179 37.4
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 7.1e-14 81.6 116 43.1
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 7.1e-14 81.6 109 50.5
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 1.6e-13 80.5 157 38.9
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 2.7e-13 79.7 162 36.4
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 4.6e-13 79.0 151 41.7
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.0e-12 77.8 112 42.0
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.0e-12 77.8 205 36.6
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 2.3e-12 76.6 108 43.5
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 3.9e-12 75.9 171 35.7
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 3.9e-12 75.9 158 39.2
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.1e-11 74.3 144 38.2
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.9e-11 73.6 66 60.6
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.5e-11 73.2 173 36.4
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 2.5e-11 73.2 183 37.7
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 4.3e-11 72.4 96 42.7
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 4.3e-11 72.4 153 38.6
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 5.6e-11 72.0 108 41.7
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 7.3e-11 71.6 173 38.2
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 9.5e-11 71.2 82 48.8
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 9.5e-11 71.2 90 45.6
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 9.5e-11 71.2 82 48.8
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 9.5e-11 71.2 82 48.8
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 1.2e-10 70.9 69 56.5
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 1.6e-10 70.5 69 53.6
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.6e-10 70.5 87 48.3
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.1e-10 70.1 64 57.8
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 2.8e-10 69.7 69 52.2
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 4.7e-10 68.9 91 46.2
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 4.7e-10 68.9 106 43.4
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 6.2e-10 68.6 157 39.5
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 1.1e-09 67.8 71 52.1
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 1.1e-09 67.8 166 38.6
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 2.3e-09 66.6 68 54.4
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 2.3e-09 66.6 145 37.2
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 4.0e-09 65.9 68 52.9
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 4.0e-09 65.9 66 51.5
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 5.2e-09 65.5 107 40.2
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 5.2e-09 65.5 112 38.4
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 6.8e-09 65.1 99 43.4
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 8.9e-09 64.7 67 52.2
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 8.9e-09 64.7 66 51.5
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 1.5e-08 63.9 98 40.8
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.5e-08 63.9 105 39.0
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 2.0e-08 63.5 186 33.3
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 2.0e-08 63.5 123 39.8
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 2.6e-08 63.2 68 51.5
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 2.6e-08 63.2 90 42.2
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 2.6e-08 63.2 145 40.0
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 2.6e-08 63.2 154 37.7
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 3.4e-08 62.8 81 48.1
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 4.4e-08 62.4 104 42.3
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 5.8e-08 62.0 126 42.1
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 7.6e-08 61.6 90 42.2
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 7.6e-08 61.6 142 34.5
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 7.6e-08 61.6 142 34.5
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 7.6e-08 61.6 144 39.6
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 7.6e-08 61.6 139 43.2
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 7.6e-08 61.6 144 40.3
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.3e-07 60.8 142 34.5
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.3e-07 60.8 142 34.5
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 1.3e-07 60.8 135 42.2
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.7e-07 60.5 77 41.6
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 1.7e-07 60.5 138 36.2
MBI16_g25207_MAGBIO Magnolia biondii HOM05D007262 ORTHO05D008524 2.2e-07 60.1 86 43.0
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 2.2e-07 60.1 156 37.2
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 2.9e-07 59.7 107 39.3
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 3.7e-07 59.3 69 47.8
MELO3C017459.2 Cucumis melo HOM05D015664 ORTHO05D008524 3.7e-07 59.3 151 33.8
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 3.7e-07 59.3 100 42.0
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 4.9e-07 58.9 89 48.3
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 4.9e-07 58.9 79 44.3
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 4.9e-07 58.9 63 52.4
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 4.9e-07 58.9 91 42.9
ATR0580G212 Amborella trichopoda HOM05D007262 ORTHO05D008524 6.4e-07 58.5 63 50.8
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 6.4e-07 58.5 135 34.8
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-06 57.8 114 36.0
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.4e-06 57.4 167 35.3
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 1.9e-06 57.0 151 35.8
COL.COLO4_28647 Corchorus olitorius HOM05D015664 ORTHO05D008524 2.4e-06 56.6 152 35.5
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 4.1e-06 55.8 77 42.9
CsaV3_1G031630 Cucumis sativus L. HOM05D015664 ORTHO05D008524 4.1e-06 55.8 119 37.0
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 5.4e-06 55.5 94 37.2
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 9.2e-06 54.7 117 41.0
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 9.2e-06 54.7 105 35.2


User provided reference genes

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