Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.5e-40 168.3 83 100.0
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 7.2e-40 166.8 83 98.8
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.3e-25 119.4 80 71.2
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 4.7e-23 110.9 80 65.0
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.0e-21 105.5 80 63.8
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.3e-21 104.8 80 65.0
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 7.5e-21 103.6 78 60.3
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 9.7e-21 103.2 83 62.7
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.3e-20 102.8 79 59.5
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.7e-20 102.4 80 63.8
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.8e-20 101.7 81 60.5
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 3.7e-20 101.3 79 55.7
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 4.8e-20 100.9 79 60.8
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 4.8e-20 100.9 80 62.5
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.8e-20 100.9 80 58.8
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 8.2e-20 100.1 80 57.5
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 8.2e-20 100.1 81 56.8
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.1e-19 99.8 80 60.0
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-19 99.8 80 61.2
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.8e-19 99.0 80 56.2
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.8e-19 99.0 80 58.8
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 3.1e-19 98.2 74 59.5
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.1e-19 97.8 79 59.5
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 4.1e-19 97.8 69 68.1
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 4.1e-19 97.8 80 57.5
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 5.3e-19 97.4 79 58.2
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.0e-19 97.1 77 59.7
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 7.0e-19 97.1 79 59.5
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.0e-19 97.1 80 60.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 9.1e-19 96.7 79 59.5
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.6e-18 95.9 80 56.2
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.6e-18 95.9 73 58.9
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.0e-18 95.5 80 58.8
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.0e-18 95.5 80 56.2
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.0e-18 95.5 80 56.2
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 2.0e-18 95.5 80 57.5
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 2.7e-18 95.1 78 56.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.5e-18 94.7 73 57.5
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.5e-18 94.7 73 57.5
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 4.5e-18 94.4 74 60.8
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.5e-18 94.4 67 62.7
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 7.7e-18 93.6 80 55.0
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-17 93.2 63 65.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-17 93.2 63 65.1
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.0e-17 93.2 80 56.2
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.0e-17 93.2 81 54.3
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.0e-17 93.2 87 52.9
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.3e-17 92.8 80 52.5
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.3e-17 92.8 80 56.2
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.3e-17 92.8 80 56.2
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.3e-17 92.8 80 56.2
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.3e-17 92.8 80 56.2
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.3e-17 92.8 80 56.2
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.3e-17 92.8 80 57.5
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.3e-17 92.8 70 58.6
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.7e-17 92.4 80 56.2
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.7e-17 92.4 67 65.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-17 92.4 80 57.5
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 2.2e-17 92.0 79 57.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.9e-17 91.7 79 54.4
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.9e-17 91.7 83 55.4
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.8e-17 91.3 83 55.4
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.0e-17 90.9 85 57.6
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 5.0e-17 90.9 78 55.1
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 5.0e-17 90.9 80 52.5
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 8.5e-17 90.1 80 55.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 8.5e-17 90.1 80 55.0
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 8.5e-17 90.1 72 61.1
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 8.5e-17 90.1 80 53.8
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 8.5e-17 90.1 80 53.8
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 8.5e-17 90.1 80 55.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-16 89.7 80 55.0
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-16 89.7 80 55.0
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-16 89.7 80 55.0
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-16 89.7 80 55.0
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.1e-16 89.7 83 54.2
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.1e-16 89.7 81 50.6
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.5e-16 89.4 77 54.5
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.5e-16 89.4 80 55.0
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.5e-16 89.4 86 53.5
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.5e-16 89.4 67 64.2
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.5e-16 89.4 69 58.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.5e-16 89.4 83 55.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-16 89.0 80 55.0
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.9e-16 89.0 80 53.8
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.9e-16 89.0 78 56.4
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 2.5e-16 88.6 80 55.0
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.5e-16 88.6 80 55.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.5e-16 88.6 79 55.7
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.5e-16 88.6 80 51.2
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.5e-16 88.6 74 59.5
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.2e-16 88.2 76 57.9
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 3.2e-16 88.2 80 51.2
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 4.2e-16 87.8 80 52.5
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 5.5e-16 87.4 84 57.1
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 5.5e-16 87.4 70 57.1
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 5.5e-16 87.4 69 58.0
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 7.2e-16 87.0 78 53.8
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 7.2e-16 87.0 67 58.2
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 7.2e-16 87.0 69 59.4
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.4e-16 86.7 68 57.4
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.4e-16 86.7 68 57.4
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.4e-16 86.7 68 57.4
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 9.4e-16 86.7 78 53.8
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 9.4e-16 86.7 78 53.8
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-15 86.3 80 52.5
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.2e-15 86.3 70 60.0
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.6e-15 85.9 73 65.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.6e-15 85.9 73 65.8
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.1e-15 85.5 83 50.6
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.1e-15 85.5 61 62.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.1e-15 85.5 68 61.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.1e-15 85.5 63 60.3
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.1e-15 85.5 76 55.3
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.1e-15 85.5 80 48.8
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 3.6e-15 84.7 83 51.8
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 3.6e-15 84.7 65 61.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 3.6e-15 84.7 80 48.8
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 4.7e-15 84.3 80 51.2
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 6.1e-15 84.0 78 51.3
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 6.1e-15 84.0 80 51.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 6.1e-15 84.0 87 48.3
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 8.0e-15 83.6 79 53.2
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.0e-14 83.2 67 58.2
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 1.0e-14 83.2 80 53.8
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.0e-14 83.2 83 50.6
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.0e-14 83.2 67 56.7
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.8e-14 82.4 77 50.6
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.8e-14 82.4 65 58.5
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 8.8e-14 80.1 63 55.6
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 8.8e-14 80.1 63 55.6
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 8.8e-14 80.1 83 51.8
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 1.5e-13 79.3 82 53.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.5e-13 79.3 65 60.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.5e-13 79.3 83 51.8
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.0e-13 79.0 67 55.2
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.0e-13 79.0 83 48.2
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.6e-13 78.6 63 58.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 2.6e-13 78.6 77 50.6
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 3.4e-13 78.2 72 52.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.7e-13 77.4 80 52.5
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 7.5e-13 77.0 80 50.0
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 7.5e-13 77.0 75 52.0
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.3e-12 76.3 72 51.4
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.3e-12 76.3 64 56.2
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.3e-12 76.3 83 47.0
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.3e-12 76.3 64 57.8
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 8.3e-12 73.6 80 53.8
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.1e-11 73.2 64 56.2
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-11 72.0 80 47.5
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-11 72.0 80 47.5
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.4e-11 72.0 74 50.0
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.5e-10 68.2 79 49.4
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.5e-10 68.2 79 49.4
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 3.5e-10 68.2 74 48.6
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 5.9e-10 67.4 73 50.7
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.9e-10 67.4 48 62.5
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.3e-09 66.2 48 62.5
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.3e-09 66.2 82 47.6
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 5.0e-09 64.3 68 50.0
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 6.5e-09 63.9 68 48.5
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 8.5e-09 63.5 60 46.7
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-08 62.4 68 48.5
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-08 62.4 68 47.1
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.5e-08 62.0 68 47.1
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.5e-08 62.0 68 47.1
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.5e-08 62.0 68 47.1
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.5e-08 62.0 68 47.1
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.5e-08 62.0 68 47.1
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 5.5e-08 60.8 68 47.1
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 5.5e-08 60.8 68 47.1
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 5.5e-08 60.8 68 47.1
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 5.5e-08 60.8 68 47.1
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 7.2e-08 60.5 68 47.1
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 7.2e-08 60.5 68 47.1
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 7.2e-08 60.5 68 47.1
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 9.4e-08 60.1 68 45.6
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 9.4e-08 60.1 68 45.6
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 1.2e-07 59.7 68 45.6
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 1.2e-07 59.7 68 45.6
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.2e-07 59.7 68 45.6
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 2.1e-07 58.9 68 45.6
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 2.1e-07 58.9 63 49.2
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.1e-07 58.9 55 49.1
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.1e-07 58.9 48 58.3
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.1e-07 57.4 47 55.3
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 2.3e-06 55.5 59 42.4
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.0e-06 55.1 62 40.3


User provided reference genes

Program Settings