Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 2.0e-104 382.5 201 100.0
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 3.6e-77 292.0 218 79.4
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 4.0e-76 288.5 211 81.5
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 6.7e-76 287.7 218 79.4
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.6e-75 285.8 217 78.3
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 2.8e-74 282.3 218 77.5
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.4e-73 280.0 210 79.0
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.8e-73 279.6 218 77.5
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.4e-73 279.3 218 77.1
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 2.0e-72 276.2 219 76.7
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.0e-71 273.9 218 75.7
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.3e-71 273.5 218 75.2
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.3e-71 273.5 218 75.2
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.7e-71 273.1 218 75.7
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.9e-71 272.3 218 74.8
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 3.8e-71 271.9 217 74.7
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 3.8e-71 271.9 217 74.7
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.8e-71 271.9 218 75.2
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.0e-71 271.6 212 76.9
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 8.5e-71 270.8 215 74.4
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 8.5e-71 270.8 211 73.9
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.1e-70 270.4 218 73.9
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.9e-70 269.6 213 74.6
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.9e-70 269.6 213 74.6
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.9e-70 269.6 213 74.6
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.9e-70 269.6 213 74.6
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.9e-70 269.6 213 74.6
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.5e-70 269.2 218 75.2
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 3.2e-70 268.9 215 74.0
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.5e-70 268.1 210 75.2
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 9.4e-70 267.3 218 75.2
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.2e-69 266.9 213 74.2
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.2e-69 266.9 220 73.6
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.6e-69 266.5 215 74.9
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 2.1e-69 266.2 219 73.5
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 2.1e-69 266.2 218 74.3
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.7e-69 265.8 215 72.1
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 3.6e-69 265.4 213 73.7
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 4.7e-69 265.0 218 74.8
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 8.0e-69 264.2 213 73.2
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 8.0e-69 264.2 218 74.8
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 8.0e-69 264.2 215 73.0
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.0e-68 263.8 213 72.8
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.8e-68 263.1 218 72.9
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 3.0e-68 262.3 220 73.2
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 6.8e-68 261.2 215 71.6
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 8.8e-68 260.8 213 72.3
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.2e-67 260.4 211 72.5
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.5e-67 260.0 219 72.6
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.6e-67 259.2 218 72.5
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.6e-67 259.2 219 72.6
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.6e-67 259.2 218 72.5
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 4.4e-67 258.5 206 71.8
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 5.7e-67 258.1 215 71.6
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 7.5e-67 257.7 215 73.0
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 3.7e-66 255.4 215 72.1
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 4.8e-66 255.0 219 72.6
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 8.3e-66 254.2 215 72.1
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.1e-65 253.8 215 71.6
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.1e-65 253.8 215 72.1
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.8e-65 253.1 218 71.1
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 4.1e-65 251.9 217 71.0
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.2e-64 250.4 215 71.6
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.2e-64 250.4 196 73.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.5e-64 248.8 212 71.7
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 7.7e-64 247.7 206 68.9
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.0e-63 247.3 212 71.7
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.0e-63 247.3 207 71.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.7e-63 246.5 215 69.3
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 8.6e-63 244.2 220 69.1
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.1e-62 243.8 209 69.9
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.5e-62 243.4 216 67.6
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 1.9e-62 243.0 212 67.5
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.9e-62 243.0 218 69.7
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.3e-62 242.3 218 67.0
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 5.5e-62 241.5 218 67.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 5.5e-62 241.5 213 70.0
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 5.5e-62 241.5 218 66.5
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 7.2e-62 241.1 217 67.3
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 7.2e-62 241.1 219 68.0
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 9.5e-62 240.7 215 67.9
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 1.2e-61 240.4 219 68.0
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 1.6e-61 240.0 216 66.7
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 2.1e-61 239.6 218 65.6
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.8e-61 239.2 218 66.5
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.8e-61 239.2 215 67.4
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 8.0e-61 237.7 213 67.6
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 8.0e-61 237.7 218 65.6
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.0e-60 237.3 210 68.6
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.0e-60 237.3 218 64.7
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.0e-60 237.3 218 64.7
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.4e-60 236.9 218 65.6
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.8e-60 236.5 205 71.7
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 3.0e-60 235.7 213 67.1
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 8.9e-60 234.2 185 78.4
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 4.4e-59 231.9 211 66.4
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.7e-58 229.9 213 68.1
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.1e-57 227.3 213 67.6
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 9.2e-57 224.2 225 63.1
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.3e-55 220.3 220 64.5
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.7e-55 219.9 219 63.0
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.8e-55 218.8 218 65.6
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 5.0e-55 218.4 216 60.2
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 2.5e-54 216.1 211 63.0
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.1e-53 211.5 215 62.8
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.3e-52 209.5 213 61.0
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 6.8e-52 208.0 210 61.0
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 6.4e-50 201.4 222 59.9
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.1e-49 200.7 211 59.7
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.6e-48 196.8 213 55.9
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.7e-47 193.4 224 55.8
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 8.6e-47 191.0 226 55.3
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.5e-46 190.3 220 58.6
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 1.5e-43 180.3 212 55.2
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.9e-42 176.0 222 55.4
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.7e-40 169.5 224 50.9
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 6.0e-40 168.3 211 55.5
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 6.0e-40 168.3 211 55.5
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 7.8e-40 167.9 101 86.1
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.1e-38 164.1 227 49.3
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 7.3e-38 161.4 226 52.2
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.6e-37 160.2 125 76.0
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.1e-36 157.5 214 53.3
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.1e-36 157.5 214 53.3
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.1e-36 157.5 214 53.3
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.0e-36 155.6 109 74.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.4e-33 147.1 217 48.8
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 5.4e-33 145.2 237 43.9
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.2e-32 144.1 210 51.4
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.5e-27 127.1 123 60.2
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 6.4e-18 95.1 121 42.1
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 6.6e-15 85.1 102 64.7
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.5e-14 84.0 43 93.0
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 2.1e-13 80.1 95 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 4.8e-13 79.0 110 42.7
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 4.8e-13 79.0 100 41.0
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 4.5e-11 72.4 120 37.5
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.6e-11 71.6 94 42.6
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.2e-09 65.9 100 38.0
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.1e-08 63.5 103 35.0
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.1e-06 57.8 98 45.9


User provided reference genes

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