Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 3.7e-288 994.2 503 100.0
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 6.1e-158 561.6 488 60.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 3.0e-157 559.3 487 58.9
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.3e-155 553.9 505 59.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 2.1e-150 536.6 483 58.2
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.8e-149 533.5 500 55.8
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.1e-148 530.8 484 55.8
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 5.7e-148 528.5 484 57.2
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.4e-148 528.1 491 57.8
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 2.4e-146 523.1 504 56.0
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.1e-146 522.7 507 55.0
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 9.1e-146 521.2 499 54.7
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.5e-145 520.4 515 53.4
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.0e-144 515.4 515 52.6
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.4e-143 513.8 516 52.9
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.4e-143 513.8 497 55.5
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 5.5e-143 511.9 497 53.9
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 3.6e-142 509.2 529 52.6
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 4.7e-142 508.8 486 53.3
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.9e-142 508.1 510 55.1
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.4e-141 507.3 486 53.9
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.8e-141 506.9 532 51.9
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 8.8e-141 504.6 488 54.7
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.6e-140 503.1 522 52.7
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 3.3e-140 502.7 488 56.1
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 4.8e-139 498.8 488 54.9
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 8.2e-139 498.0 488 54.7
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 6.5e-136 488.4 511 49.5
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 2.5e-135 486.5 520 51.0
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 7.2e-135 485.0 492 52.4
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 7.2e-135 485.0 492 52.4
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 6.1e-134 481.9 487 54.0
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.0e-133 481.1 528 50.0
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.4e-133 480.7 527 49.1
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 6.7e-133 478.4 492 51.8
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 8.8e-133 478.0 490 51.6
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 3.3e-132 476.1 494 51.6
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 4.4e-132 475.7 509 48.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 7.5e-132 474.9 487 52.6
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.7e-131 473.8 542 49.3
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 8.2e-131 471.5 521 49.3
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.4e-130 470.7 534 48.3
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 7.0e-130 468.4 505 51.5
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 7.0e-130 468.4 493 51.7
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.6e-129 467.2 487 51.5
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 2.0e-129 466.8 513 49.9
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.9e-128 463.0 491 50.5
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 2.9e-128 463.0 484 51.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 5.0e-128 462.2 513 50.7
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 8.5e-128 461.5 501 50.1
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.5e-127 460.7 510 49.6
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 1.5e-127 460.7 524 49.2
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.5e-127 459.9 598 44.5
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 5.5e-127 458.8 533 48.4
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 5.5e-127 458.8 491 50.1
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.2e-126 457.6 605 43.6
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 8.0e-126 454.9 376 59.8
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 8.0e-126 454.9 512 48.0
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.4e-125 454.1 486 50.4
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 3.0e-125 453.0 484 50.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 4.0e-125 452.6 486 50.0
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 4.0e-125 452.6 488 50.6
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 4.0e-125 452.6 487 49.5
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.2e-124 451.1 509 47.9
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.5e-124 450.7 499 49.5
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 3.4e-124 449.5 485 50.1
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 2.2e-123 446.8 625 43.8
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.8e-123 446.4 486 50.4
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 3.7e-123 446.0 526 48.7
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 3.7e-123 446.0 535 48.6
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 3.7e-123 446.0 526 48.7
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 1.8e-122 443.7 489 48.9
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 4.1e-122 442.6 507 48.9
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.0e-121 440.3 371 59.8
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 3.5e-121 439.5 486 50.8
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 4.5e-121 439.1 488 47.3
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.0e-120 438.0 490 48.2
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.3e-120 437.6 537 47.5
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 2.3e-120 436.8 484 49.8
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 5.0e-120 435.6 495 51.3
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 6.5e-120 435.3 538 47.4
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.5e-120 435.3 383 57.7
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 8.6e-120 434.9 489 49.5
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.6e-120 434.9 432 55.3
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 4.2e-119 432.6 419 52.3
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 7.2e-119 431.8 503 48.3
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 7.2e-119 431.8 458 50.0
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.2e-118 431.0 445 52.4
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.8e-118 429.9 383 56.9
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.3e-117 426.8 486 47.1
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 8.9e-117 424.9 452 50.7
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.3e-115 421.0 489 46.2
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.8e-115 419.9 558 43.2
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 4.5e-113 412.5 414 50.7
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 5.9e-113 412.1 518 44.0
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 5.9e-113 412.1 488 47.5
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.5e-111 407.5 452 48.2
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.6e-110 404.1 493 47.1
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.0e-110 401.7 502 45.2
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.4e-109 401.0 576 41.1
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 5.2e-109 399.1 485 46.2
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 8.3e-107 391.7 521 42.8
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 3.2e-106 389.8 485 44.9
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 9.2e-106 388.3 484 44.2
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.7e-104 384.0 512 45.5
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 8.6e-104 381.7 490 45.9
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 8.6e-104 381.7 490 45.9
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.1e-103 381.3 490 45.9
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.3e-103 379.8 502 44.2
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.6e-100 370.2 497 41.9
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.9e-95 354.0 486 42.4
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.6e-94 350.9 502 42.2
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.0e-92 344.0 486 44.0
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.1e-88 329.3 321 53.3
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.8e-86 323.6 482 41.5
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 1.4e-85 321.2 316 50.9
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.2e-82 310.1 485 39.4
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 9.2e-82 308.5 494 38.7
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 2.1e-81 307.4 489 39.7
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 6.0e-81 305.8 427 42.9
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 5.1e-80 302.8 245 57.1
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 6.6e-80 302.4 506 37.5
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.1e-72 276.2 283 53.0
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.3e-70 271.6 485 35.7
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 4.0e-69 266.5 390 42.1
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 9.3e-66 255.4 303 41.6
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.1e-65 254.2 390 40.8
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 2.7e-65 253.8 480 37.1
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 4.3e-63 246.5 367 37.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 6.2e-62 242.7 486 34.0
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.8e-61 241.1 345 40.6
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 1.7e-59 234.6 432 35.4
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.5e-57 226.9 304 41.1
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 7.4e-55 219.2 413 34.4
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.6e-54 218.0 245 50.6
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 8.2e-54 215.7 483 33.1
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 3.5e-49 200.3 199 52.3
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 7.9e-41 172.6 284 40.8
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 1.8e-40 171.4 516 30.0
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 4.8e-38 163.3 192 45.8
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.8e-37 161.4 280 39.6
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.5e-35 152.9 151 53.0
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 1.1e-31 142.1 127 56.7
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.3e-31 140.6 324 30.6
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.4e-29 135.2 280 37.5
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 4.1e-29 133.7 572 27.6
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 4.2e-26 123.6 96 55.2
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 3.0e-24 117.5 325 28.3
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.9e-24 117.1 121 52.1
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.4e-21 108.6 193 37.8
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.4e-21 107.8 103 50.5
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.6e-20 105.1 73 65.8
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 7.7e-20 102.8 168 36.3
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 3.2e-18 97.4 57 64.9
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 1.2e-17 95.5 392 26.0
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.3e-16 91.3 65 67.7
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 2.6e-15 87.8 86 44.2
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 5.7e-15 86.7 559 20.9
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.2e-14 84.7 74 58.1
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 7.0e-13 79.7 260 26.5
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 2.0e-12 78.2 61 55.7
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 4.5e-12 77.0 88 42.0
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 1.3e-11 75.5 190 32.1
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 3.8e-11 73.9 310 24.8
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 6.5e-11 73.2 315 23.8
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 6.5e-11 73.2 315 23.8
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.1e-10 72.4 310 24.2
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.5e-10 72.0 310 24.5
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 2.5e-10 71.2 344 23.3
Cfa025051 Carpinus fangiana HOM05D004232 ORTHO05D004909 3.2e-10 70.9 543 22.3
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 3.2e-10 70.9 335 23.6
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 4.2e-10 70.5 308 24.0
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 5.5e-10 70.1 317 24.9
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 7.2e-10 69.7 317 23.3
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 2.7e-09 67.8 76 43.4
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 4.7e-09 67.0 89 39.3
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 6.1e-09 66.6 307 23.8
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.0e-08 64.3 311 23.5
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 1.3e-06 58.9 199 27.1
HanXRQChr16g0532771 Helianthus annuus HOM05D004232 ORTHO05D004909 1.3e-06 58.9 45 57.8
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 2.8e-06 57.8 307 22.8
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 3.7e-06 57.4 200 28.0
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 3.7e-06 57.4 200 28.0
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 3.7e-06 57.4 200 28.0
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 3.7e-06 57.4 200 28.0
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.7e-06 57.4 201 24.9
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 6.3e-06 56.6 200 27.5


User provided reference genes

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