Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 6.2e-188 660.6 324 100.0
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.0e-41 174.9 338 39.3
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 6.7e-41 172.2 330 36.4
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 4.8e-39 166.0 347 39.5
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 4.8e-39 166.0 347 39.5
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.8e-36 156.4 365 35.3
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 2.1e-34 150.6 377 34.2
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 3.7e-31 139.8 288 36.8
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 8.2e-31 138.7 217 42.4
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.8e-30 137.5 350 34.3
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 5.3e-30 136.0 356 35.4
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 6.9e-30 135.6 363 34.2
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 9.0e-30 135.2 284 37.3
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 2.0e-29 134.0 253 39.5
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 2.0e-29 134.0 330 32.1
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 2.6e-29 133.7 354 35.6
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 4.5e-29 132.9 354 35.3
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 7.6e-29 132.1 240 39.2
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 1.7e-28 131.0 259 35.1
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 3.8e-28 129.8 240 38.8
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 3.2e-27 126.7 366 29.5
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 3.2e-27 126.7 357 34.2
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 3.2e-27 126.7 294 35.4
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 5.5e-27 125.9 317 30.3
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 5.5e-27 125.9 398 30.9
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 7.1e-27 125.6 339 31.9
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 9.3e-27 125.2 277 33.2
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 2.7e-26 123.6 328 31.4
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 4.6e-26 122.9 369 32.0
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 4.6e-26 122.9 281 34.2
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.0e-25 121.7 164 42.1
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.3e-25 121.3 363 33.3
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 1.8e-25 120.9 336 31.5
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 1.8e-25 120.9 339 31.3
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 5.1e-25 119.4 297 34.7
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 1.1e-24 118.2 327 29.7
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 7.4e-24 115.5 181 44.2
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 2.2e-23 114.0 298 32.9
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 6.3e-23 112.5 254 33.9
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 1.1e-22 111.7 357 29.7
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 1.1e-22 111.7 350 31.4
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.8e-22 110.9 333 32.4
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 2.4e-22 110.5 222 36.9
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 4.1e-22 109.8 250 32.8
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.2e-21 108.2 331 32.3
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 1.5e-21 107.8 360 30.8
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.6e-21 107.1 292 31.5
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 3.4e-21 106.7 237 34.2
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.0e-20 105.1 326 31.9
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 6.5e-20 102.4 288 34.4
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 3.2e-19 100.1 287 34.1
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 4.2e-19 99.8 370 26.8
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 1.6e-18 97.8 158 42.4
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.7e-18 97.1 185 34.6
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 3.6e-18 96.7 301 30.6
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 3.0e-17 93.6 205 35.6
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 5.1e-17 92.8 262 30.9
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.3e-15 88.2 239 32.2
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 1.7e-15 87.8 269 34.2
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 6.3e-15 85.9 144 39.6
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 4.1e-14 83.2 152 36.2
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 4.1e-14 83.2 269 32.0
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 5.3e-14 82.8 252 34.5
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 1.2e-13 81.6 288 30.9
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.2e-13 81.6 283 30.4
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 1.5e-13 81.3 219 29.7
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 1.5e-13 81.3 328 29.3
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 3.4e-13 80.1 253 35.2
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 5.9e-13 79.3 255 34.5
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 7.7e-13 79.0 330 27.9
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 1.0e-12 78.6 208 30.8
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 8.5e-12 75.5 212 29.7
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 1.9e-11 74.3 151 30.5
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 2.7e-10 70.5 339 26.0
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 7.9e-10 68.9 333 27.0
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 5.1e-09 66.2 60 53.3
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 5.7e-08 62.8 83 43.4
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 9.7e-08 62.0 142 31.7
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.3e-07 61.6 35 68.6
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.3e-07 61.6 35 68.6
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 1.7e-07 61.2 85 41.2
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 2.8e-07 60.5 34 70.6
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 8.2e-07 58.9 53 49.1
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-06 58.5 113 36.3
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-06 58.5 113 36.3
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 1.4e-06 58.2 114 36.0
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 3.1e-06 57.0 34 61.8
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 4.1e-06 56.6 128 29.7
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 4.1e-06 56.6 128 29.7
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 9.1e-06 55.5 34 58.8
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 9.1e-06 55.5 34 58.8


User provided reference genes

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