Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 5.3e-209 730.7 351 100.0
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.5e-159 563.9 373 74.0
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 5.5e-158 561.2 323 81.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.8e-156 556.2 358 74.6
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.0e-156 555.4 355 75.2
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.9e-151 538.9 374 70.9
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 1.5e-150 536.6 359 73.5
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 3.2e-150 535.4 356 74.2
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.6e-149 533.1 352 73.9
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 6.1e-149 531.2 353 73.9
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 8.0e-149 530.8 355 73.2
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.2e-147 526.9 358 71.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.5e-147 526.6 351 73.8
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.5e-147 526.6 359 72.1
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.6e-147 525.8 359 72.1
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 5.7e-147 524.6 373 68.1
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.3e-146 523.5 355 71.5
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.3e-146 523.5 355 71.5
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 6.3e-146 521.2 357 71.4
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 8.3e-146 520.8 353 73.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.1e-145 520.4 354 72.0
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.1e-145 520.4 370 69.2
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.4e-145 520.0 355 70.4
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.4e-145 519.2 350 72.0
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.1e-145 518.8 342 74.6
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 3.1e-145 518.8 351 73.2
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 4.1e-145 518.5 350 71.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 4.1e-145 518.5 356 72.5
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 9.1e-145 517.3 352 71.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.6e-144 516.5 356 70.5
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 4.5e-144 515.0 355 70.4
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.0e-143 511.5 354 71.8
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.1e-142 510.4 356 69.4
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.5e-142 509.2 349 71.3
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 7.2e-142 507.7 350 72.3
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 7.2e-142 507.7 356 68.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.2e-141 506.9 350 71.7
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.2e-141 506.9 356 68.5
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.6e-141 506.5 350 72.0
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 2.1e-141 506.1 350 72.3
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 2.8e-141 505.8 349 71.6
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.6e-141 505.4 343 72.0
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 4.7e-141 505.0 356 69.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 4.7e-141 505.0 353 71.7
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.1e-141 504.6 353 71.7
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.1e-141 504.6 353 71.7
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 8.0e-141 504.2 350 70.3
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 8.9e-140 500.7 356 68.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.2e-139 500.4 350 70.9
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.5e-139 500.0 350 70.9
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.5e-139 500.0 343 72.0
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.6e-139 499.2 356 69.1
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 3.4e-139 498.8 357 67.8
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.4e-139 498.8 354 69.8
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 4.4e-139 498.4 350 70.3
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 5.7e-139 498.0 349 70.2
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.3e-138 496.9 351 70.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.3e-138 496.9 341 71.3
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.7e-138 496.5 371 66.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.2e-138 496.1 354 68.6
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.2e-138 496.1 378 66.7
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.8e-138 495.7 352 70.2
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.9e-138 495.0 350 70.3
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-137 493.8 353 69.4
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.4e-137 493.4 351 69.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.4e-137 492.7 351 70.1
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.1e-137 491.9 348 68.7
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.0e-137 491.1 352 69.9
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 9.2e-137 490.7 356 68.3
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.6e-136 490.0 365 68.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.6e-136 490.0 359 68.5
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.0e-136 489.6 354 68.4
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.5e-136 488.8 351 67.8
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.3e-135 486.1 339 71.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.3e-135 486.1 354 67.5
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 5.0e-135 485.0 357 68.6
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 5.6e-134 481.5 353 68.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.2e-133 480.3 344 71.2
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 5.2e-132 474.9 352 66.5
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.5e-131 473.4 316 74.1
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 7.5e-131 471.1 325 72.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.7e-130 468.8 373 61.1
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.4e-129 466.1 350 67.7
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 7.0e-129 464.5 356 66.6
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.0e-127 460.7 350 66.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 3.0e-127 459.1 350 66.6
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.0e-127 459.1 356 65.2
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 7.3e-126 454.5 362 61.9
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 7.3e-126 454.5 350 66.9
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 9.5e-126 454.1 350 65.7
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.8e-125 452.6 368 64.7
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.6e-125 452.2 350 65.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.1e-124 450.7 350 65.7
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 2.3e-124 449.5 350 64.9
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 4.0e-124 448.7 350 65.7
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 5.2e-124 448.4 349 66.2
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 8.9e-124 447.6 350 64.3
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 8.9e-124 447.6 357 65.0
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.5e-123 446.8 361 61.2
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.0e-123 446.4 362 61.6
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 2.6e-123 446.0 350 65.4
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.4e-123 445.7 350 65.7
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 9.8e-123 444.1 350 65.4
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 9.8e-123 444.1 350 66.3
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.7e-122 442.2 365 61.4
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.9e-121 439.9 350 64.0
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 2.4e-121 439.5 350 65.1
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 2.4e-121 439.5 350 65.1
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.1e-120 436.4 342 65.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 3.5e-120 435.6 342 65.2
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.3e-119 433.0 527 47.6
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 3.0e-119 432.6 349 64.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.9e-119 432.2 342 64.6
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 5.1e-119 431.8 355 61.4
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-116 423.7 377 59.4
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.6e-115 419.5 350 62.9
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.4e-115 419.1 350 62.0
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 5.8e-115 418.3 420 53.1
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 9.9e-115 417.5 372 58.9
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 3.7e-114 415.6 342 62.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.9e-114 415.2 346 64.7
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.9e-114 415.2 329 61.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 6.4e-114 414.8 319 65.8
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 8.3e-114 414.5 350 60.6
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 8.3e-114 414.5 329 62.9
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 4.1e-113 412.1 350 61.7
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.3e-111 407.1 361 58.7
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 3.6e-109 399.1 330 64.5
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 6.8e-108 394.8 435 51.0
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 5.8e-107 391.7 325 65.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 8.4e-106 387.9 417 51.3
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.5e-102 377.1 361 53.7
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.8e-93 345.5 242 67.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 8.1e-93 344.7 347 54.5
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 9.3e-89 331.3 344 52.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.6e-83 313.2 376 46.3
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.7e-82 310.5 308 55.5
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.7e-82 310.5 384 47.9
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.3e-70 269.2 381 40.9
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.1e-68 264.6 380 41.6
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 3.1e-68 263.1 161 74.5
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.4e-67 259.6 238 54.2
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.2e-64 251.1 229 63.8
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-64 251.1 222 62.6
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.0e-63 248.1 344 41.0
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 4.3e-62 242.7 385 37.4
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 2.2e-61 240.4 288 51.7
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 2.2e-61 240.4 288 51.7
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 8.2e-61 238.4 221 58.8
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.8e-53 213.4 168 66.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.1e-52 209.5 195 56.9
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 3.5e-51 206.5 134 76.1
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 3.5e-43 179.9 128 63.3
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-37 161.4 366 30.9
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.1e-36 156.8 88 78.4
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.2e-31 139.4 343 31.8
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.7e-30 136.0 122 56.6
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-26 124.8 76 71.1
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.5e-17 94.7 78 61.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.1e-16 90.9 63 65.1
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.8e-08 63.9 33 75.8


User provided reference genes

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