Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 1.6e-67 259.2 125 100.0
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 1.4e-18 96.7 131 45.0
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 1.3e-16 90.1 97 52.6
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 1.9e-15 86.3 127 44.9
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 5.4e-15 84.7 72 59.7
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.3e-13 80.1 85 54.1
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 5.1e-13 78.2 103 50.5
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 5.1e-13 78.2 107 45.8
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 8.6e-13 77.4 106 50.0
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 9.5e-12 73.9 73 60.3
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 9.5e-12 73.9 89 50.6
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.2e-11 73.6 86 53.5
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.2e-11 73.6 86 53.5
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.1e-11 72.8 87 50.6
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 2.1e-11 72.8 85 52.9
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 2.8e-11 72.4 109 45.0
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.8e-11 72.4 89 49.4
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 3.6e-11 72.0 83 50.6
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 4.7e-11 71.6 70 62.9
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 4.7e-11 71.6 89 56.2
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 8.1e-11 70.9 111 45.9
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 2.3e-10 69.3 72 55.6
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 3.1e-10 68.9 72 55.6
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 3.1e-10 68.9 111 46.8
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 4.0e-10 68.6 87 50.6
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 4.0e-10 68.6 81 51.9
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 4.0e-10 68.6 70 57.1
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 4.0e-10 68.6 74 58.1
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 5.2e-10 68.2 83 50.6
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 8.9e-10 67.4 66 59.1
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.2e-09 67.0 73 53.4
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 1.5e-09 66.6 89 49.4
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 1.5e-09 66.6 73 57.5
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.5e-09 66.6 117 39.3
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 2.6e-09 65.9 89 49.4
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 3.4e-09 65.5 67 52.2
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 4.4e-09 65.1 73 53.4
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 4.4e-09 65.1 118 39.0
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 5.8e-09 64.7 82 50.0
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 9.9e-09 63.9 63 58.7
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 9.9e-09 63.9 72 52.8
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.3e-08 63.5 70 57.1
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 2.2e-08 62.8 87 47.1
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 6.4e-08 61.2 91 42.9
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 6.4e-08 61.2 81 48.1
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 6.4e-08 61.2 81 48.1
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 6.4e-08 61.2 67 53.7
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 8.3e-08 60.8 70 51.4
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 8.3e-08 60.8 70 51.4
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 1.9e-07 59.7 67 52.2
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-07 59.7 72 51.4
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.9e-07 59.7 72 51.4
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.9e-07 59.7 72 52.8
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 2.4e-07 59.3 83 44.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 4.1e-07 58.5 65 55.4
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 4.1e-07 58.5 70 50.0
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 4.1e-07 58.5 67 53.7
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 5.4e-07 58.2 72 52.8
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 5.4e-07 58.2 67 56.7
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 9.2e-07 57.4 91 45.1
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 1.2e-06 57.0 72 48.6
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 1.2e-06 57.0 72 48.6
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 1.2e-06 57.0 106 41.5
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.2e-06 57.0 75 50.7
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 1.2e-06 57.0 72 50.0
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 1.6e-06 56.6 72 47.2
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 1.6e-06 56.6 72 47.2
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 1.6e-06 56.6 73 49.3
Oeu008318.1 Olea europaea HOM05D007107 ORTHO05D009198 1.6e-06 56.6 63 54.0
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 1.6e-06 56.6 63 50.8
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 1.6e-06 56.6 70 48.6
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 2.7e-06 55.8 73 46.6
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 2.7e-06 55.8 91 40.7
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 2.7e-06 55.8 73 45.2
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 2.7e-06 55.8 89 43.8
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 3.5e-06 55.5 72 48.6
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 3.5e-06 55.5 73 47.9
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 6.0e-06 54.7 70 48.6
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 6.0e-06 54.7 87 44.8
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 7.8e-06 54.3 74 47.3
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 7.8e-06 54.3 74 47.3
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 7.8e-06 54.3 74 47.3


User provided reference genes

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