Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004430 Simmondsia chinensis HOM05D006534 ORTHO05D006434 2.1e-29 132.1 91 100.0
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 9.0e-20 100.1 99 73.7
Ah.01g007070 Amaranthus hybridus HOM05D006534 ORTHO05D006434 1.7e-18 95.9 102 71.6
Ca_02937_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 3.8e-18 94.7 92 78.3
TWI14G1419 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 6.5e-18 94.0 91 82.4
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 6.1e-16 87.4 97 76.3
CsaV3_4G000160 Cucumis sativus L. HOM05D006534 ORTHO05D006434 1.0e-15 86.7 92 77.2
Glyma.11G002000 Glycine max HOM05D006534 ORTHO05D006434 5.1e-15 84.3 104 71.2
HanXRQChr16g0509341 Helianthus annuus HOM05D006534 ORTHO05D006434 6.7e-15 84.0 91 79.1
ClCG10G010140 Citrullus lanatus HOM05D006534 ORTHO05D006434 8.8e-15 83.6 91 75.8
Lj5g0022695 Lotus japonicus HOM05D006534 ORTHO05D006434 1.1e-14 83.2 97 71.1
Atru.chr5.2330 Acer truncatum HOM05D006534 ORTHO05D006434 1.5e-14 82.8 96 77.1
Thecc.02G118300 Theobroma cacao HOM05D006534 ORTHO05D006434 1.5e-14 82.8 91 78.0
ECA236G3390 Erigeron canadensis HOM05D006534 ORTHO05D006434 4.3e-14 81.3 91 79.1
Phvul.007G046300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 5.7e-14 80.9 95 77.9
Lalb_Chr06g0165061 Lupinus albus HOM05D006534 ORTHO05D006434 1.7e-13 79.3 91 67.0
Duzib248G1096 Durio zibethinus HOM05D006534 ORTHO05D006434 2.8e-13 78.6 91 75.8
Duzib052G0836 Durio zibethinus HOM05D006534 ORTHO05D006434 3.7e-13 78.2 91 64.8
Glyma.17G160200 Glycine max HOM05D006534 ORTHO05D006434 3.7e-13 78.2 92 67.4
Oeu013796.1 Olea europaea HOM05D006534 ORTHO05D006434 3.7e-13 78.2 92 77.2
Sed0015576 Sechium edule HOM05D006534 ORTHO05D006434 3.7e-13 78.2 98 71.4
Eucgr.G01204 Eucalyptus grandis HOM05D012446 ORTHO05D006434 4.8e-13 77.8 75 82.7
PGR042G3724 Punica granatum HOM05D006534 ORTHO05D006434 4.8e-13 77.8 93 79.6
Lalb_Chr16g0389271 Lupinus albus HOM05D006534 ORTHO05D006434 6.3e-13 77.4 92 69.6
HPP92_006071 Vanilla planifolia HOM05D006534 ORTHO05D006434 6.3e-13 77.4 92 71.7
Ciclev10026875m.g Citrus clementina HOM05D006534 ORTHO05D006434 8.2e-13 77.0 91 60.4
GSVIVG01037814001 Vitis vinifera HOM05D006534 ORTHO05D006434 8.2e-13 77.0 95 70.5
Cfa004139 Carpinus fangiana HOM05D006534 ORTHO05D006434 1.1e-12 76.6 93 61.3
Ciclev10029655m.g Citrus clementina HOM05D006534 ORTHO05D006434 2.4e-12 75.5 100 65.0
Dinv42239 Davidia involucrata HOM05D006534 ORTHO05D006434 9.1e-12 73.6 93 72.0
Gorai.008G020000 Gossypium raimondii HOM05D006534 ORTHO05D006434 1.2e-11 73.2 91 75.8
Aqoxy5G01709 Aquilegia oxysepala HOM05D006534 ORTHO05D006434 1.5e-11 72.8 95 69.5
MD02G1187200 Malus domestica HOM05D006534 ORTHO05D006434 2.0e-11 72.4 93 71.0
Sed0014956 Sechium edule HOM05D006534 ORTHO05D006434 2.0e-11 72.4 93 68.8
GSVIVG01002630001 Vitis vinifera HOM05D006534 ORTHO05D006434 2.0e-11 72.4 91 65.9
CANSAT01G0131 Cannabis sativa HOM05D006534 ORTHO05D006434 2.6e-11 72.0 95 73.7
CANSAT25G2579 Cannabis sativa HOM05D006534 ORTHO05D006434 3.4e-11 71.6 95 75.8
CANSAT25G3637 Cannabis sativa HOM05D006534 ORTHO05D006434 3.4e-11 71.6 95 75.8
arahy.Tifrunner.gnm1.ann1.HPS7HM Arachis hypogaea HOM05D006534 ORTHO05D006434 5.9e-11 70.9 93 67.7
Ca_22100_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 1.0e-10 70.1 92 67.4
Glyma.01G242200 Glycine max HOM05D006534 ORTHO05D006434 1.7e-10 69.3 107 63.6
Lalb_Chr02g0144951 Lupinus albus HOM05D006534 ORTHO05D006434 1.7e-10 69.3 93 59.1
RcHm_v2.0_Chr2g0108271 Rosa chinensis HOM05D006534 ORTHO05D006434 1.7e-10 69.3 95 71.6
BcaC03g18364 Brassica carinata HOM05D006534 ORTHO05D006434 2.2e-10 68.9 88 65.9
CiPaw.05G018800 Carya illinoinensis HOM05D006534 ORTHO05D006434 3.8e-10 68.2 92 66.3
arahy.Tifrunner.gnm1.ann1.VT3BTZ Arachis hypogaea HOM05D006534 ORTHO05D006434 5.0e-10 67.8 92 69.6
Psat4g081440 Pisum sativum HOM05D006534 ORTHO05D006434 6.5e-10 67.4 92 62.0
TWI59G0168 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 8.5e-10 67.0 91 72.5
Sp2g29050 Schrenkiella parvula HOM05D006534 ORTHO05D006434 1.4e-09 66.2 88 69.3
Phvul.003G234300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 4.2e-09 64.7 92 68.5
FAN26G0795 Fragaria x ananassa HOM05D006534 ORTHO05D006434 5.5e-09 64.3 95 74.7
Manes.12G115500 Manihot esculenta HOM05D006534 ORTHO05D006434 7.2e-09 63.9 92 65.2
CDE04G3098 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 9.4e-09 63.5 91 70.3
C03p59650 Brassica napus HOM05D006534 ORTHO05D006434 1.6e-08 62.8 88 72.7
BolC3t18227H Brassica oleracea HOM05D006534 ORTHO05D006434 1.6e-08 62.8 88 72.7
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 1.6e-08 62.8 94 67.0
PSO170G0329 Papaver somniferum HOM05D006534 ORTHO05D006434 1.6e-08 62.8 98 62.2
Potri.014G005200 Populus trichocarpa HOM05D006534 ORTHO05D006434 1.6e-08 62.8 91 65.9
Solyc09g098300.3 Solanum lycopersicum HOM05D006534 ORTHO05D006434 1.6e-08 62.8 93 71.0
CDE06G1753 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 2.7e-08 62.0 97 70.1
Glyma.10G256400 Glycine max HOM05D006534 ORTHO05D006434 2.7e-08 62.0 95 67.4
Glyma.20G135200 Glycine max HOM05D006534 ORTHO05D006434 2.7e-08 62.0 95 67.4
THA.LOC104821207 Tarenaya hassleriana HOM05D006534 ORTHO05D006434 2.7e-08 62.0 88 65.9
Manes.13G110700 Manihot esculenta HOM05D006534 ORTHO05D006434 4.7e-08 61.2 91 71.4
Prupe.6G219500 Prunus persica HOM05D006534 ORTHO05D006434 1.0e-07 60.1 93 71.0
Actinidia32842 Actinidia chinensis HOM05D066417 ORTHO05D006434 1.4e-07 59.7 99 51.5
BcaNung05866 Brassica carinata HOM05D006534 ORTHO05D006434 1.4e-07 59.7 88 65.9
PGSC0003DMG400021608 Solanum tuberosum HOM05D006534 ORTHO05D006434 1.4e-07 59.7 80 76.2
HPP92_007768 Vanilla planifolia HOM05D006534 ORTHO05D006434 1.4e-07 59.7 101 64.4
HPP92_007868 Vanilla planifolia HOM05D006534 ORTHO05D006434 1.4e-07 59.7 101 64.4
CDE07G0925 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 2.3e-07 58.9 38 71.1
AUR62030851 Chenopodium quinoa HOM05D006534 ORTHO05D006434 2.3e-07 58.9 97 68.0
PSO017G6129 Papaver somniferum HOM05D006534 ORTHO05D006434 2.3e-07 58.9 102 62.7
AL8G43700 Arabidopsis lyrata HOM05D006534 ORTHO05D006434 3.0e-07 58.5 88 61.4
Gohir.D02G203600 Gossypium hirsutum HOM05D006534 ORTHO05D006434 3.0e-07 58.5 91 68.1
Gorai.005G230700 Gossypium raimondii HOM05D006534 ORTHO05D006434 3.0e-07 58.5 91 68.1
Peaxi162Scf00152g00528 Petunia axillaris HOM05D006534 ORTHO05D006434 3.0e-07 58.5 77 71.4
AT5G67600 Arabidopsis thaliana HOM05D006534 ORTHO05D006434 3.9e-07 58.2 88 64.8
Carub.0008s2687 Capsella rubella HOM05D006534 ORTHO05D006434 3.9e-07 58.2 88 64.8
Dinv04040 Davidia involucrata HOM05D006534 ORTHO05D006434 3.9e-07 58.2 33 84.8
Dinv26940 Davidia involucrata HOM05D006534 ORTHO05D006434 6.7e-07 57.4 90 55.6
CARHR279990 Cardamine hirsuta HOM05D006534 ORTHO05D006434 8.8e-07 57.0 88 59.1
Gohir.D13G019750 Gossypium hirsutum HOM05D006534 ORTHO05D006434 8.8e-07 57.0 75 72.0
MD05G1101800 Malus domestica HOM05D012446 ORTHO05D015770 8.8e-07 57.0 88 67.0
Sabra09G0066500 Salix brachista HOM05D006534 ORTHO05D006434 8.8e-07 57.0 81 74.1
A02p44130 Brassica napus HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 62.5
C02p64390 Brassica napus HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 62.5
BolC2t12503H Brassica oleracea HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 62.5
BraA02t09336Z Brassica rapa HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 62.5
Actinidia27993 Actinidia chinensis HOM05D006534 ORTHO05D006434 1.5e-06 56.2 94 68.1
BcaNung05864 Brassica carinata HOM05D001027 ORTHO05D000844 1.5e-06 56.2 36 77.8
Haze_10267 Corylus avellana HOM05D006534 ORTHO05D006434 1.5e-06 56.2 77 70.1
Migut.B00452 Erythranthe guttata HOM05D006534 ORTHO05D006434 2.0e-06 55.8 94 66.0
Psat6g213720 Pisum sativum HOM05D006534 ORTHO05D006434 2.0e-06 55.8 99 62.6
Gohir.A03G181900 Gossypium hirsutum HOM05D006534 ORTHO05D006434 2.6e-06 55.5 91 67.0
CSS0021262 Camellia sinensis var. sinensis HOM05D006534 ORTHO05D006434 4.4e-06 54.7 93 68.8
CSS0022822 Camellia sinensis var. sinensis HOM05D006534 ORTHO05D006434 4.4e-06 54.7 93 68.8
BraA06t26214Z Brassica rapa HOM05D006534 ORTHO05D006434 5.7e-06 54.3 88 64.8
CiPaw.06G165200 Carya illinoinensis HOM05D006534 ORTHO05D006434 5.7e-06 54.3 92 69.6
Aa31LG1G16150 Aethionema arabicum HOM05D006534 ORTHO05D006434 7.4e-06 53.9 88 56.8
CAN.G710.46 Capsicum annuum HOM05D012446 ORTHO05D015770 7.4e-06 53.9 77 68.8
Sp5g05410 Schrenkiella parvula HOM05D006534 ORTHO05D006434 7.4e-06 53.9 121 48.8
AUR62027011 Chenopodium quinoa HOM05D012446 ORTHO05D006434 9.7e-06 53.5 79 69.6
MELO3C020842.2 Cucumis melo HOM05D028586 ORTHO05D006434 9.7e-06 53.5 91 61.5
Thhalv10017476m.g Eutrema salsugineum HOM05D019499 ORTHO05D006434 9.7e-06 53.5 96 68.8


User provided reference genes

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