Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.8e-32 142.1 78 100.0
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.4e-15 84.7 78 67.9
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.8e-15 83.2 77 70.1
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.3e-14 82.8 73 71.2
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-14 82.8 77 71.4
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-14 82.8 77 71.4
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.2e-14 82.0 77 71.4
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 3.7e-14 81.3 77 67.5
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 3.7e-14 81.3 74 71.6
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.3e-14 80.5 75 68.0
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 6.3e-14 80.5 77 68.8
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 6.3e-14 80.5 73 69.9
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.3e-14 80.5 77 70.1
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 6.3e-14 80.5 75 70.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 8.3e-14 80.1 77 70.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 8.3e-14 80.1 75 69.3
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 8.3e-14 80.1 77 67.5
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 8.3e-14 80.1 77 68.8
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 8.3e-14 80.1 73 69.9
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.1e-13 79.7 77 64.9
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.4e-13 79.3 77 70.1
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-13 79.3 71 67.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.8e-13 79.0 77 67.5
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-13 79.0 77 70.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-13 79.0 77 70.1
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.8e-13 79.0 77 68.8
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.4e-13 78.6 73 68.5
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.4e-13 78.6 76 68.4
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.4e-13 78.6 77 67.5
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.2e-13 78.2 72 72.2
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.2e-13 78.2 77 68.8
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 4.1e-13 77.8 73 67.1
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.1e-13 77.8 77 66.2
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.1e-13 77.8 77 66.2
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.4e-13 77.4 75 68.0
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.4e-13 77.4 77 66.2
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.4e-13 77.4 78 65.4
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.4e-13 77.4 78 65.4
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 7.0e-13 77.0 73 67.1
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 7.0e-13 77.0 73 67.1
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.0e-13 77.0 77 64.9
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 9.2e-13 76.6 77 67.5
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 9.2e-13 76.6 77 66.2
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 9.2e-13 76.6 77 67.5
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 9.2e-13 76.6 76 64.5
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.2e-12 76.3 77 62.3
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.2e-12 76.3 73 65.8
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.6e-12 75.9 73 65.8
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.6e-12 75.9 77 63.6
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.6e-12 75.9 75 66.7
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 2.0e-12 75.5 77 67.5
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.0e-12 75.5 75 66.7
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.0e-12 75.5 73 65.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.0e-12 75.5 71 66.2
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.7e-12 75.1 77 64.9
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.7e-12 75.1 69 66.7
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 2.7e-12 75.1 69 66.7
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.7e-12 75.1 73 64.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.5e-12 74.7 73 65.8
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 4.6e-12 74.3 77 64.9
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 4.6e-12 74.3 72 68.1
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 5.9e-12 73.9 73 63.0
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 5.9e-12 73.9 73 63.0
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 7.8e-12 73.6 71 69.0
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.0e-11 73.2 77 63.6
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.0e-11 73.2 71 63.4
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.0e-11 73.2 71 63.4
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.3e-11 72.8 68 64.7
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.3e-11 72.0 68 64.7
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.9e-11 71.6 72 65.3
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 5.0e-11 70.9 75 60.0
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 6.6e-11 70.5 76 61.8
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.5e-10 69.3 73 58.9
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 3.3e-10 68.2 72 58.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.3e-10 68.2 71 54.9
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 4.3e-10 67.8 69 65.2
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 5.6e-10 67.4 68 61.8
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 7.3e-10 67.0 73 54.8
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 9.5e-10 66.6 71 52.1
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 9.5e-10 66.6 71 52.1
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.6e-09 65.9 71 64.8
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 2.8e-09 65.1 77 50.6
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 2.8e-09 65.1 77 50.6
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 3.6e-09 64.7 72 59.7
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 4.7e-09 64.3 69 65.2
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 8.0e-09 63.5 70 54.3
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.4e-08 62.8 71 52.1
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.8e-08 62.4 64 65.6
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 2.3e-08 62.0 75 52.0
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 2.3e-08 62.0 75 52.0
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 2.3e-08 62.0 75 52.0
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 2.3e-08 62.0 75 52.0
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 2.3e-08 62.0 75 52.0
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 3.1e-08 61.6 73 54.8
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 3.1e-08 61.6 71 52.1
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.1e-08 61.6 61 67.2
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 8.9e-08 60.1 64 67.2
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 1.2e-07 59.7 71 50.7
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 3.4e-07 58.2 70 51.4
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.4e-06 53.9 76 43.4
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.3e-06 53.5 65 52.3


User provided reference genes

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