Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 0.0e+00 1454.9 900 100.0
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.7e-81 308.5 946 37.3
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 6.5e-78 296.6 912 31.4
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 5.2e-75 287.0 906 35.2
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 9.7e-74 282.7 885 33.2
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.7e-73 282.0 937 35.5
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 8.2e-73 279.6 909 35.2
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.5e-69 268.1 884 30.8
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.6e-68 265.4 936 37.0
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 4.0e-67 260.8 931 32.3
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 2.5e-61 241.5 903 32.0
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 2.5e-61 241.5 903 32.0
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.4e-61 239.6 869 29.9
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 1.2e-60 239.2 923 29.8
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.6e-60 238.8 940 34.6
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 6.1e-60 236.9 924 34.0
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 9.8e-58 229.6 902 29.4
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 2.2e-57 228.4 897 31.1
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.2e-55 222.6 945 29.3
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 2.0e-55 221.9 950 30.1
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 6.6e-54 216.9 948 28.2
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 5.5e-53 213.8 922 28.5
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.2e-52 212.6 348 44.0
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.6e-52 212.2 928 32.2
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.6e-52 211.1 890 30.7
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.0e-51 209.5 965 28.9
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 2.6e-50 204.9 983 27.4
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 7.5e-50 203.4 885 30.3
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.7e-49 202.2 916 29.6
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.7e-49 201.1 918 26.9
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 4.9e-49 200.7 971 27.4
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 9.2e-48 196.4 1041 26.1
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.7e-46 192.2 928 27.4
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.3e-45 188.0 901 28.9
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 3.6e-44 184.5 918 27.6
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 6.1e-44 183.7 882 27.2
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.4e-43 182.6 905 28.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.4e-43 182.6 929 27.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.3e-43 181.8 897 28.8
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.0e-43 181.0 911 27.7
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 3.4e-42 177.9 911 28.4
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 4.4e-42 177.6 899 28.5
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 7.5e-42 176.8 1024 31.4
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 9.8e-42 176.4 913 30.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.9e-41 174.1 901 28.1
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.9e-40 172.2 930 30.0
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 2.4e-40 171.8 938 27.8
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.0e-39 168.7 496 32.7
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 3.5e-39 167.9 524 34.9
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 3.5e-39 167.9 504 33.7
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.3e-38 165.2 492 32.5
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 3.0e-38 164.9 363 36.4
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 3.9e-38 164.5 380 36.8
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 3.9e-38 164.5 295 41.0
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 5.0e-38 164.1 925 27.1
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.0e-38 164.1 491 32.4
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 8.6e-38 163.3 919 27.1
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.1e-37 162.9 514 33.3
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.1e-37 162.9 917 27.4
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 3.3e-37 161.4 332 38.0
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 3.3e-37 161.4 528 34.5
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.8e-36 158.3 379 37.5
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 3.6e-36 157.9 539 32.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 8.0e-36 156.8 524 33.6
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 8.0e-36 156.8 335 37.3
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.1e-35 156.4 902 33.6
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.4e-35 156.0 852 29.7
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.8e-35 155.6 336 39.3
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.8e-35 155.6 336 39.3
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 6.8e-35 153.7 347 39.2
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 2.6e-34 151.8 869 28.5
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.7e-33 149.1 924 28.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 2.9e-33 148.3 462 38.1
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.9e-33 148.3 954 27.9
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 6.4e-33 147.1 945 32.2
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.2e-32 144.8 923 27.7
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.5e-31 141.4 390 36.7
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 6.0e-31 140.6 294 41.2
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.0e-30 139.8 369 35.8
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.3e-30 139.4 492 32.3
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 3.9e-30 137.9 334 37.4
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 2.5e-29 135.2 920 28.4
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 3.3e-29 134.8 172 49.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 5.6e-29 134.0 892 27.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.2e-28 132.9 478 34.7
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 1.6e-28 132.5 895 26.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 2.1e-28 132.1 370 37.0
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 1.8e-27 129.0 521 31.1
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 6.8e-27 127.1 929 24.9
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.2e-26 126.3 902 24.2
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 3.4e-26 124.8 546 29.1
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 6.4e-25 120.6 964 25.2
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 6.4e-25 120.6 924 23.9
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.4e-24 119.4 982 26.5
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.4e-24 119.4 495 28.1
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.2e-24 118.2 502 27.7
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 7.1e-24 117.1 560 28.9
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 7.8e-23 113.6 548 31.2
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.3e-22 112.8 503 33.2
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 4.3e-21 107.8 710 28.7
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 7.3e-21 107.1 958 23.6
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 9.5e-21 106.7 541 32.2
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.6e-20 105.9 553 27.1
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 1.6e-20 105.9 254 37.0
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.6e-20 105.9 542 27.3
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 2.8e-20 105.1 508 28.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.6e-20 104.8 557 27.5
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.7e-20 104.4 534 27.0
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 8.1e-20 103.6 516 27.3
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 8.1e-20 103.6 502 31.5
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 8.1e-20 103.6 516 27.3
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 8.1e-20 103.6 548 26.3
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 6.8e-19 100.5 511 26.8
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.5e-18 99.4 547 26.7
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 2.2e-17 95.5 274 32.8
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 2.2e-17 95.5 507 28.8
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.9e-17 95.1 335 31.6
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.1e-16 93.2 308 32.5
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 1.9e-16 92.4 246 37.0
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.2e-16 91.7 892 26.7
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 4.2e-16 91.3 516 30.0
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.4e-16 90.9 648 26.9
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 3.9e-14 84.7 328 32.3
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 8.7e-14 83.6 502 30.7
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.5e-13 82.0 258 33.7
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 2.1e-12 79.0 150 41.3
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 2.8e-12 78.6 174 37.9
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 4.7e-12 77.8 229 32.8
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 4.7e-12 77.8 174 37.9
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 6.2e-12 77.4 136 43.4
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 3.1e-11 75.1 916 25.7
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 9.0e-11 73.6 101 48.5
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.0e-10 72.4 67 59.7
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 1.1e-08 66.6 335 31.3
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 3.2e-08 65.1 259 32.4
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 4.2e-08 64.7 234 30.8
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 7.1e-08 63.9 133 42.1
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 7.1e-08 63.9 287 34.1
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 1.2e-07 63.2 88 52.3
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.1e-07 62.4 79 45.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 2.7e-07 62.0 242 31.8
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.0e-07 60.8 108 41.7
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.7e-06 59.3 212 33.5
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.7e-06 59.3 133 41.4
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.7e-06 59.3 147 35.4
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 2.3e-06 58.9 213 33.3
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 3.9e-06 58.2 229 29.7
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 8.7e-06 57.0 229 30.1


User provided reference genes

Program Settings