Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.2e-286 989.2 517 100.0
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 4.9e-94 349.4 545 45.9
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.5e-90 335.1 506 46.6
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 5.2e-88 329.3 553 43.0
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.2e-87 328.2 535 43.7
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 7.5e-87 325.5 501 47.9
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 2.2e-86 323.9 546 43.4
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.4e-85 319.3 541 44.9
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.6e-84 317.8 616 43.0
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.0e-84 317.4 530 46.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 6.0e-84 315.8 521 43.0
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 5.0e-83 312.8 504 45.4
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.2e-81 308.1 492 43.7
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 2.8e-81 307.0 501 43.5
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 8.0e-81 305.4 518 43.8
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.8e-80 304.3 557 40.9
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 3.4e-79 300.1 510 43.3
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.4e-79 299.7 486 44.7
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 2.2e-78 297.4 510 43.1
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.1e-77 295.0 510 43.3
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.4e-77 294.7 525 42.1
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.2e-77 293.5 536 42.2
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 5.4e-77 292.7 547 39.9
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.6e-76 291.2 547 41.3
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.7e-76 290.4 505 43.8
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 2.3e-75 287.3 472 44.3
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 5.1e-75 286.2 538 40.9
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 5.6e-74 282.7 540 41.5
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.2e-73 279.3 509 40.7
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.8e-72 277.7 502 41.0
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.2e-71 275.0 494 42.1
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 1.5e-71 274.6 500 41.2
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.0e-71 274.2 497 42.1
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-71 274.2 533 42.2
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.5e-71 272.3 512 40.8
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.3e-70 271.6 522 41.0
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-70 271.6 522 41.0
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.7e-70 271.2 481 41.8
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.7e-70 271.2 503 40.8
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.2e-70 270.8 515 40.2
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.2e-70 270.8 548 40.7
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 6.4e-70 269.2 490 42.0
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 8.3e-70 268.9 508 40.2
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.9e-69 267.7 547 37.5
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 7.1e-69 265.8 483 41.8
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 9.2e-69 265.4 490 42.4
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 9.2e-69 265.4 516 39.5
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.2e-68 265.0 483 40.8
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.0e-67 261.9 535 39.6
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-67 261.5 569 38.7
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 3.0e-67 260.4 508 41.3
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 5.1e-67 259.6 480 40.2
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.3e-66 256.9 523 39.2
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.3e-66 256.9 558 37.3
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 6.2e-65 252.7 533 38.5
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 8.1e-65 252.3 468 39.7
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 1.4e-64 251.5 487 41.5
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.8e-64 251.1 509 39.7
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 4.0e-64 250.0 519 40.5
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 2.2e-62 244.2 517 38.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 6.4e-62 242.7 515 38.8
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.9e-61 241.1 490 38.2
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.2e-61 240.4 639 35.4
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.2e-60 238.4 227 58.6
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 1.2e-60 238.4 198 62.6
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.6e-60 238.0 491 39.3
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 6.6e-59 232.6 523 37.7
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 8.7e-59 232.3 503 37.4
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.1e-58 231.9 503 36.0
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.5e-58 231.5 479 38.0
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 3.3e-58 230.3 527 37.2
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 5.6e-58 229.6 491 39.3
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 8.1e-57 225.7 508 38.6
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.4e-56 224.2 513 35.9
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 3.1e-56 223.8 460 40.0
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.5e-55 221.5 519 35.8
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.0e-55 221.1 507 37.1
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 2.6e-55 220.7 516 37.0
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 3.4e-55 220.3 597 33.0
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 7.6e-55 219.2 596 32.2
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.7e-54 218.0 548 35.4
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 4.9e-54 216.5 224 57.6
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 4.2e-53 213.4 489 37.4
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 7.1e-53 212.6 479 37.6
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.2e-52 211.8 544 35.8
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 2.7e-52 210.7 603 33.0
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 6.0e-52 209.5 629 32.4
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 6.0e-52 209.5 529 37.2
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 7.8e-52 209.1 489 37.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.0e-51 208.8 430 40.2
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 6.6e-51 206.1 513 36.1
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.1e-50 205.3 513 36.1
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-50 204.5 511 36.0
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 2.5e-50 204.1 539 35.6
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 3.3e-50 203.8 546 34.6
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 5.6e-50 203.0 500 35.8
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 2.1e-49 201.1 529 34.8
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 6.2e-49 199.5 604 31.8
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.1e-48 198.7 542 34.3
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 5.3e-48 196.4 513 34.7
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.2e-46 191.0 473 36.2
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 8.4e-46 189.1 478 34.9
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 8.4e-46 189.1 218 50.5
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 4.2e-45 186.8 507 33.9
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 3.9e-43 180.3 508 33.5
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 5.1e-43 179.9 485 34.6
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.3e-42 177.2 502 35.5
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 7.4e-42 176.0 567 31.9
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 3.7e-41 173.7 501 35.3
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 4.0e-40 170.2 475 33.3
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 4.2e-37 160.2 470 32.8
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 3.9e-35 153.7 505 30.5
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.6e-33 148.3 480 34.0
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.7e-30 138.3 495 30.1
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 8.4e-30 136.0 73 84.9
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 3.2e-29 134.0 672 29.2
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.2e-28 132.1 430 32.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.3e-27 128.6 396 34.1
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 5.1e-27 126.7 146 55.5
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.8e-22 110.5 142 48.6
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 7.2e-21 106.3 75 65.3
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 4.8e-17 93.6 116 53.4
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.4e-13 82.0 107 46.7
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 3.6e-12 77.4 39 82.1
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.7e-11 73.2 164 37.8
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 8.8e-11 72.8 65 58.5
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.8e-09 67.8 52 57.7
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 5.3e-08 63.5 48 58.3
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 4.5e-07 60.5 349 26.6
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 7.7e-07 59.7 95 46.3
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.8e-06 57.4 177 33.3
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 5.0e-06 57.0 37 64.9
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 5.0e-06 57.0 61 47.5


User provided reference genes

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