Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.7e-51 205.7 100 100.0
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.7e-51 205.7 100 100.0
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.9e-24 114.8 80 66.2
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 8.7e-24 113.6 81 64.2
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.5e-23 112.1 80 66.2
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.5e-23 112.1 80 66.2
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 2.5e-23 112.1 76 67.1
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.3e-23 111.7 80 67.5
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 7.3e-23 110.5 80 66.2
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 9.6e-23 110.2 77 64.9
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 9.6e-23 110.2 79 63.3
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 9.6e-23 110.2 67 76.1
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 1.3e-22 109.8 71 70.4
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 1.3e-22 109.8 76 68.4
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.3e-22 109.8 76 65.8
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.6e-22 109.4 80 63.8
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.6e-22 109.4 81 64.2
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 1.6e-22 109.4 76 67.1
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-22 109.0 67 74.6
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.1e-22 109.0 67 74.6
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 2.1e-22 109.0 68 72.1
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 3.6e-22 108.2 68 70.6
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 3.6e-22 108.2 68 72.1
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 3.6e-22 108.2 67 73.1
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 4.8e-22 107.8 71 71.8
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 4.8e-22 107.8 67 74.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 6.2e-22 107.5 67 74.6
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 6.2e-22 107.5 67 74.6
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 6.2e-22 107.5 67 73.1
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 6.2e-22 107.5 67 73.1
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 6.2e-22 107.5 67 74.6
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 6.2e-22 107.5 68 70.6
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 6.2e-22 107.5 82 63.4
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 6.2e-22 107.5 76 65.8
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 6.2e-22 107.5 76 67.1
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 6.2e-22 107.5 71 64.8
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 8.1e-22 107.1 77 63.6
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 8.1e-22 107.1 71 69.0
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.1e-21 106.7 67 73.1
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.1e-21 106.7 68 70.6
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.1e-21 106.7 76 64.5
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.4e-21 106.3 76 63.2
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.4e-21 106.3 71 70.4
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.8e-21 105.9 71 70.4
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.8e-21 105.9 78 62.8
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.8e-21 105.9 71 69.0
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 2.4e-21 105.5 80 58.8
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 2.4e-21 105.5 67 73.1
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.4e-21 105.5 76 63.2
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.1e-21 105.1 75 65.3
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 3.1e-21 105.1 68 67.6
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 3.1e-21 105.1 76 64.5
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 3.1e-21 105.1 68 70.6
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.1e-21 105.1 76 65.8
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 4.0e-21 104.8 67 71.6
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 4.0e-21 104.8 67 71.6
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 4.0e-21 104.8 67 71.6
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 4.0e-21 104.8 67 71.6
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 4.0e-21 104.8 76 64.5
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 4.0e-21 104.8 68 67.6
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 5.3e-21 104.4 71 69.0
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 5.3e-21 104.4 79 64.6
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 6.9e-21 104.0 67 71.6
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 6.9e-21 104.0 68 69.1
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 6.9e-21 104.0 75 65.3
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 9.0e-21 103.6 68 72.1
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 9.0e-21 103.6 68 72.1
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 9.0e-21 103.6 68 72.1
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.2e-20 103.2 76 61.8
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.2e-20 103.2 76 61.8
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 1.2e-20 103.2 77 64.9
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-20 103.2 97 53.6
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.5e-20 102.8 67 70.1
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-20 102.4 76 60.5
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-20 102.4 76 60.5
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 2.0e-20 102.4 76 61.8
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 2.6e-20 102.1 67 68.7
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.6e-20 102.1 71 66.2
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.4e-20 101.7 69 68.1
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 4.5e-20 101.3 72 63.9
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 4.5e-20 101.3 98 55.1
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 5.8e-20 100.9 67 68.7
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 5.8e-20 100.9 80 63.8
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 5.8e-20 100.9 67 68.7
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 5.8e-20 100.9 76 59.2
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 5.8e-20 100.9 97 55.7
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 5.8e-20 100.9 75 64.0
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 7.6e-20 100.5 71 66.2
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 7.6e-20 100.5 77 63.6
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 9.9e-20 100.1 76 59.2
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 9.9e-20 100.1 75 62.7
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.3e-19 99.8 80 61.2
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.3e-19 99.8 69 68.1
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.7e-19 99.4 73 68.5
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.7e-19 99.4 72 63.9
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.7e-19 99.4 77 61.0
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 2.2e-19 99.0 64 68.8
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.2e-19 99.0 67 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 2.9e-19 98.6 80 55.0
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 2.9e-19 98.6 73 64.4
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 2.9e-19 98.6 82 57.3
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.8e-19 98.2 74 60.8
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.8e-19 98.2 67 62.7
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 4.9e-19 97.8 73 64.4
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 6.4e-19 97.4 67 68.7
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 6.4e-19 97.4 67 68.7
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 6.4e-19 97.4 76 56.6
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 6.4e-19 97.4 67 62.7
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 8.4e-19 97.1 76 56.6
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 8.4e-19 97.1 76 56.6
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 8.4e-19 97.1 70 65.7
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 8.4e-19 97.1 72 59.7
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 8.4e-19 97.1 72 59.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 8.4e-19 97.1 67 65.7
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.1e-18 96.7 69 66.7
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.4e-18 96.3 68 61.8
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.4e-18 95.5 67 64.2
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 4.2e-18 94.7 69 65.2
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.4e-18 94.4 72 56.9
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.4e-18 94.4 68 66.2
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.1e-18 94.0 80 57.5
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.6e-17 92.8 68 69.1
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 2.7e-17 92.0 76 55.3
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 3.5e-17 91.7 72 55.6
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.0e-16 90.1 70 55.7
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.3e-16 89.7 72 56.9
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.3e-16 89.0 72 59.7
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.3e-16 89.0 79 49.4
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.3e-16 89.0 79 49.4
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 6.7e-16 87.4 65 58.5
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.7e-16 87.0 82 51.2
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 2.5e-15 85.5 80 43.8
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 6.2e-14 80.9 65 53.8
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 8.1e-14 80.5 66 50.0
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 2.6e-12 75.5 60 61.7
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-10 70.1 42 71.4
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.9e-10 69.3 57 56.1
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-09 66.6 46 65.2
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.7e-09 65.5 53 50.9
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 5.1e-08 61.2 43 65.1
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.1e-07 60.1 55 50.9


User provided reference genes

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