Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.5e-144 514.2 250 100.0
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.3e-108 394.0 203 92.1
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.7e-55 219.2 139 71.2
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.4e-54 217.2 152 67.8
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 9.0e-54 214.5 139 71.9
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 9.0e-54 214.5 137 70.8
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-53 213.4 138 73.2
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 2.0e-53 213.4 139 71.9
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 2.0e-53 213.4 135 72.6
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.4e-53 212.6 137 72.3
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 7.6e-53 211.5 136 72.8
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.0e-52 211.1 137 70.1
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.3e-52 210.7 138 69.6
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.7e-52 210.3 137 68.6
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.7e-52 210.3 137 70.8
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 1.7e-52 210.3 134 72.4
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 3.8e-52 209.1 139 67.6
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 3.8e-52 209.1 137 67.9
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 6.5e-52 208.4 142 66.9
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 6.5e-52 208.4 137 68.6
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 8.5e-52 208.0 141 67.4
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 8.5e-52 208.0 139 70.5
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 8.5e-52 208.0 139 66.9
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 8.5e-52 208.0 135 69.6
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 8.5e-52 208.0 137 69.3
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 1.1e-51 207.6 136 70.6
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.5e-51 206.5 139 67.6
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.5e-51 206.5 139 66.9
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 3.2e-51 206.1 135 69.6
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 3.2e-51 206.1 135 69.6
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 4.2e-51 205.7 145 64.8
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 7.2e-51 204.9 139 64.0
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 7.2e-51 204.9 135 70.4
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 9.3e-51 204.5 135 67.4
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.2e-50 204.1 139 66.2
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.2e-50 204.1 136 69.1
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 1.2e-50 204.1 137 67.9
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.2e-50 204.1 137 65.7
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 1.6e-50 203.8 137 67.9
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.7e-50 203.0 137 66.4
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 2.7e-50 203.0 141 65.2
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 2.7e-50 203.0 136 68.4
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 2.7e-50 203.0 137 68.6
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 3.6e-50 202.6 135 67.4
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 3.6e-50 202.6 135 67.4
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.6e-50 202.6 152 65.8
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 3.6e-50 202.6 137 67.2
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 3.6e-50 202.6 131 68.7
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 4.6e-50 202.2 137 70.1
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 6.1e-50 201.8 136 65.4
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.0e-49 201.1 137 65.0
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 1.8e-49 200.3 137 66.4
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.0e-49 199.5 146 62.3
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 3.0e-49 199.5 136 66.2
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 3.0e-49 199.5 133 66.2
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 3.9e-49 199.1 141 63.8
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 5.1e-49 198.7 140 63.6
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 6.7e-49 198.4 135 67.4
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 6.7e-49 198.4 135 67.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 8.7e-49 198.0 134 64.2
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.1e-48 197.6 136 65.4
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 1.1e-48 197.6 137 64.2
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 1.1e-48 197.6 151 61.6
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 1.1e-48 197.6 151 61.6
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 1.1e-48 197.6 135 64.4
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.9e-48 196.8 142 60.6
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.5e-48 196.4 136 68.4
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 3.3e-48 196.1 130 70.8
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 3.3e-48 196.1 137 65.7
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 3.3e-48 196.1 134 67.2
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 3.3e-48 196.1 134 66.4
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 3.3e-48 196.1 137 65.0
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 4.3e-48 195.7 136 64.7
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 4.3e-48 195.7 137 62.0
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 4.3e-48 195.7 147 61.9
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 7.4e-48 194.9 137 65.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 7.4e-48 194.9 131 66.4
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 9.7e-48 194.5 139 61.9
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 9.7e-48 194.5 134 64.9
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 9.7e-48 194.5 137 65.7
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-47 194.1 139 61.9
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.3e-47 194.1 139 61.9
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.3e-47 194.1 139 61.9
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.3e-47 194.1 139 62.6
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 1.6e-47 193.7 139 61.9
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 1.6e-47 193.7 139 62.6
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.6e-47 193.7 139 61.9
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.2e-47 193.4 139 61.9
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.2e-47 193.4 144 61.1
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.8e-47 193.0 139 61.2
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.7e-47 192.6 130 66.9
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 4.8e-47 192.2 141 61.0
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 6.3e-47 191.8 139 61.2
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 8.2e-47 191.4 139 61.2
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 8.2e-47 191.4 134 61.2
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.2e-47 191.4 142 57.7
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.1e-46 191.0 139 61.9
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.1e-46 191.0 139 61.2
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.1e-46 191.0 139 61.2
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-46 190.7 139 61.9
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.4e-46 190.7 134 67.2
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.8e-46 190.3 134 67.9
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 1.8e-46 190.3 139 61.2
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.4e-46 189.9 139 61.9
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.4e-46 189.9 139 61.9
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 4.1e-46 189.1 136 62.5
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.1e-46 188.0 145 62.8
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.2e-45 187.6 145 61.4
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.5e-45 187.2 134 61.2
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 2.0e-45 186.8 141 58.9
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 2.6e-45 186.4 149 58.4
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.5e-45 185.7 140 56.4
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.5e-45 185.7 145 60.7
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.0e-44 184.5 134 60.4
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.3e-44 184.1 139 59.7
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.3e-44 184.1 143 60.1
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.6e-42 177.2 135 58.5
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.6e-42 177.2 138 60.1
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.6e-42 176.0 148 57.4
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 3.6e-42 176.0 137 58.4
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 4.6e-42 175.6 143 55.9
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.9e-41 172.6 145 57.2
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 5.1e-41 172.2 135 60.0
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.7e-41 171.8 132 56.1
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.7e-40 168.7 147 55.8
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.7e-39 167.2 132 55.3
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.2e-39 166.8 141 52.5
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 2.8e-39 166.4 111 67.6
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.4e-38 163.3 87 90.8
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-38 162.5 138 54.3
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 2.0e-37 160.2 121 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 6.5e-36 155.2 135 52.6
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.1e-32 144.4 140 47.9
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.7e-31 140.6 135 45.9
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 3.5e-29 132.9 136 43.4
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 4.5e-29 132.5 130 46.9
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-27 127.1 135 48.9
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 6.7e-25 118.6 95 64.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.0e-20 104.8 125 39.2
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.0e-17 94.7 92 51.1
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 4.1e-14 82.8 77 50.6
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.0e-12 78.2 164 34.1
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.7e-12 77.4 106 41.5
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 8.6e-12 75.1 62 56.5


User provided reference genes

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