Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.5e-236 820.8 404 100.0
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.3e-182 643.3 390 79.5
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.6e-180 636.3 388 79.4
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 2.9e-179 632.1 391 78.0
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.2e-178 628.2 393 77.6
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 7.2e-178 627.5 393 77.6
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 7.2e-178 627.5 391 77.2
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 9.4e-178 627.1 388 78.6
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.6e-177 626.3 391 78.0
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.7e-177 625.5 390 78.2
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 6.1e-177 624.4 391 77.7
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.8e-176 622.9 390 77.4
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.3e-176 622.5 386 78.2
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 3.0e-176 622.1 391 77.0
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 4.0e-176 621.7 396 75.3
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 4.0e-176 621.7 391 77.7
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.2e-175 620.2 391 76.7
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 1.5e-175 619.8 391 77.0
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.5e-175 619.8 390 77.4
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.6e-175 619.0 390 76.7
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 4.4e-175 618.2 390 74.9
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.8e-174 615.5 390 77.2
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.7e-174 615.1 390 76.9
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 3.7e-174 615.1 388 76.8
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 3.7e-174 615.1 390 76.7
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 8.3e-174 614.0 391 76.7
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.1e-173 613.6 390 75.9
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 5.4e-173 611.3 384 76.8
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 7.0e-173 610.9 390 75.9
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-172 610.1 391 75.2
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.2e-172 610.1 387 77.0
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.2e-172 610.1 391 74.4
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.6e-172 609.8 391 75.4
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.5e-172 608.6 391 74.9
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.5e-172 608.2 391 74.9
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 2.9e-171 605.5 391 75.4
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.9e-171 605.5 390 76.2
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.9e-171 605.5 392 74.7
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 3.8e-171 605.1 391 74.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 8.6e-171 604.0 391 74.2
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.1e-170 603.6 372 78.0
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.9e-170 602.8 391 74.4
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.9e-170 602.8 386 76.2
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.5e-170 602.4 391 75.7
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 5.5e-170 601.3 391 74.9
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 5.5e-170 601.3 391 74.4
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 7.2e-170 600.9 392 73.2
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.2e-169 600.1 392 73.2
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-169 600.1 391 74.4
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.2e-169 600.1 386 75.9
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.1e-169 599.4 394 74.6
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.6e-169 598.6 409 72.9
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 4.7e-169 598.2 391 74.4
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.7e-169 598.2 418 71.5
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 4.7e-169 598.2 391 73.9
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 6.1e-169 597.8 388 74.5
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 8.0e-169 597.4 392 74.0
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 1.4e-168 596.7 391 73.4
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 2.3e-168 595.9 391 74.2
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 6.8e-168 594.3 391 73.1
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 6.8e-168 594.3 386 76.2
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 8.8e-168 594.0 391 74.2
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 8.8e-168 594.0 389 73.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 8.8e-168 594.0 392 73.0
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.2e-167 593.6 391 73.1
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.2e-167 593.6 397 74.1
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.5e-167 593.2 391 73.9
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 1.5e-167 593.2 386 74.9
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.5e-167 593.2 391 73.9
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 2.0e-167 592.8 391 74.7
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 3.4e-167 592.0 391 73.7
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.4e-167 591.7 392 73.5
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 7.5e-167 590.9 392 73.0
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 9.8e-167 590.5 391 73.1
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.2e-166 589.3 392 72.4
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.8e-166 589.0 391 72.4
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.4e-165 586.6 392 72.7
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 2.4e-165 585.9 392 72.2
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 3.1e-165 585.5 391 71.6
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 2.0e-164 582.8 391 72.9
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 2.7e-164 582.4 391 72.4
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 3.5e-164 582.0 376 75.5
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-163 580.5 392 73.5
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.7e-163 579.7 391 72.6
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.7e-163 579.7 391 72.6
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.7e-163 579.7 391 72.6
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 6.6e-163 577.8 392 71.7
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 8.6e-163 577.4 391 72.1
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 8.6e-163 577.4 392 71.2
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 1.5e-162 576.6 391 72.6
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.5e-162 576.6 391 71.9
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.5e-162 575.9 387 73.1
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 3.3e-162 575.5 391 71.1
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 4.3e-162 575.1 391 72.9
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 7.3e-162 574.3 386 75.4
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 7.3e-162 574.3 391 71.6
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.6e-161 573.2 397 71.0
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 2.1e-161 572.8 391 71.4
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 2.8e-161 572.4 386 72.0
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 4.7e-161 571.6 391 72.4
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 8.9e-160 567.4 385 70.6
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.0e-159 566.2 385 70.1
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.3e-158 563.5 404 69.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 6.4e-158 561.2 397 70.0
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.8e-157 559.7 409 68.0
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.4e-157 559.3 373 73.5
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 4.1e-157 558.5 395 70.6
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 3.5e-156 555.4 371 71.4
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 4.6e-156 555.1 373 73.2
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 5.9e-156 554.7 372 72.8
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.3e-155 553.5 418 67.7
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.7e-155 553.1 386 69.4
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.3e-155 552.7 392 69.9
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 5.6e-154 548.1 372 72.3
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 2.6e-151 539.3 348 74.4
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.4e-151 538.5 375 70.9
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.2e-148 530.4 373 70.5
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 2.7e-148 529.3 389 69.2
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.0e-147 527.3 391 65.2
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.1e-146 523.9 323 78.0
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.5e-146 523.5 391 69.6
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.3e-146 521.9 387 66.1
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.6e-137 493.4 322 73.9
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 3.4e-135 485.7 383 61.6
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 3.5e-132 475.7 322 70.8
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.9e-131 472.2 387 59.2
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.8e-129 466.1 290 77.6
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.3e-126 457.2 308 73.7
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.6e-124 450.3 395 59.5
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 6.6e-123 444.9 391 60.1
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 5.8e-111 405.2 386 52.8
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 5.5e-109 398.7 323 60.1
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-97 360.5 246 72.8
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 2.7e-92 343.2 238 71.4
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 9.7e-90 334.7 234 71.4
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.7e-78 297.4 240 62.5
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 6.5e-78 295.4 267 56.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.2e-66 258.1 170 75.3
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 2.7e-60 236.9 158 70.9
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.4e-56 222.6 124 81.5
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 7.0e-56 222.2 155 67.7
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.3e-53 213.4 137 73.7
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.5e-53 211.8 139 71.2
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.6e-52 211.1 138 72.5
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.8e-52 210.3 139 71.2
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 3.0e-51 206.8 201 52.7
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 4.9e-49 199.5 140 70.7
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.3e-46 190.7 128 71.1
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 7.0e-40 169.1 95 81.1
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 3.0e-38 163.7 98 77.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 3.9e-38 163.3 125 64.8
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.5e-37 160.6 105 74.3
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 9.9e-26 122.1 105 59.0
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.1e-19 102.1 63 76.2
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.4e-19 101.7 63 76.2
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 8.9e-19 99.0 63 71.4
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 4.4e-18 96.7 63 69.8
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-17 95.1 63 69.8
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.9e-17 94.0 71 60.6
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 3.0e-14 84.0 57 63.2
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 2.1e-12 77.8 54 64.8
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 9.0e-11 72.4 54 63.0
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 9.3e-08 62.4 337 22.6


User provided reference genes

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