Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.6e-303 1045.4 569 100.0
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 3.2e-224 781.9 571 74.1
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.2e-223 780.0 572 74.1
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.6e-223 779.6 572 74.0
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 3.6e-223 778.5 570 73.5
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 9.1e-211 737.3 567 70.5
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.0e-205 719.5 566 68.9
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 5.4e-203 711.4 567 69.3
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.6e-202 709.9 568 70.6
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 1.2e-199 700.3 572 68.0
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 4.7e-199 698.4 572 68.2
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.4e-198 696.8 562 68.1
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 5.2e-198 694.9 571 67.8
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 7.5e-197 691.0 567 66.3
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 9.8e-197 690.6 553 69.1
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.1e-195 687.2 569 66.8
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 1.1e-195 687.2 567 66.1
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.8e-195 686.4 573 66.7
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.9e-193 679.1 566 67.8
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 6.6e-193 677.9 572 66.3
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.5e-192 676.0 568 67.3
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 4.3e-192 675.2 571 68.0
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 9.5e-192 674.1 548 67.9
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.2e-191 673.7 582 65.8
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.6e-191 673.3 573 66.0
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 2.8e-191 672.5 568 66.0
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 3.6e-191 672.2 570 66.5
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 6.8e-190 667.9 564 65.1
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 8.9e-190 667.5 565 66.4
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.0e-189 666.4 571 66.4
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 2.0e-189 666.4 565 65.3
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 9.8e-189 664.1 565 65.3
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 2.2e-188 662.9 579 63.9
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 8.3e-188 661.0 571 65.3
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 1.1e-187 660.6 567 66.8
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.4e-187 660.2 560 64.6
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.8e-187 659.8 577 64.3
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.4e-187 659.4 577 64.3
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 2.4e-187 659.4 578 64.2
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.2e-187 659.1 585 62.2
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 4.1e-187 658.7 565 65.7
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 5.4e-187 658.3 567 64.4
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 7.0e-187 657.9 568 65.0
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.2e-186 657.1 563 65.7
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.6e-186 656.8 573 62.1
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 2.0e-186 656.4 581 61.6
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.7e-186 656.0 569 64.3
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 4.6e-186 655.2 573 61.4
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 5.9e-186 654.8 565 64.2
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 5.9e-186 654.8 566 64.0
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.0e-185 654.1 567 64.6
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 2.3e-185 652.9 565 65.0
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 5.0e-185 651.7 565 65.0
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.0e-185 651.7 565 65.0
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.1e-184 650.6 577 62.2
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.5e-184 650.2 562 64.8
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.9e-184 649.8 562 64.6
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 2.5e-184 649.4 560 63.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 5.6e-184 648.3 562 66.9
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 7.3e-184 647.9 566 63.4
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 1.2e-183 647.1 565 64.4
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.6e-183 646.7 544 67.5
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.6e-183 646.7 567 62.6
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.1e-182 644.0 563 62.7
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.2e-182 641.7 565 64.6
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 8.9e-182 641.0 565 64.6
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 1.5e-181 640.2 573 62.5
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 2.0e-181 639.8 565 63.7
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 2.0e-181 639.8 565 63.0
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.0e-181 639.8 565 64.4
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.4e-181 639.0 565 63.0
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 4.4e-181 638.6 565 63.7
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 7.5e-181 637.9 556 64.2
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.3e-180 637.1 633 58.8
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.7e-180 636.7 567 62.4
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.4e-179 633.6 565 62.1
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 3.2e-179 632.5 566 63.1
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 2.7e-178 629.4 568 60.9
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 7.8e-178 627.9 558 62.9
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.0e-177 627.5 567 63.0
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 3.0e-177 625.9 573 62.8
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 5.0e-177 625.2 589 61.6
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 1.9e-176 623.2 565 61.6
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 4.3e-176 622.1 568 63.4
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 4.7e-175 618.6 566 60.6
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 4.0e-174 615.5 580 61.9
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 8.9e-174 614.4 582 61.3
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 9.9e-173 610.9 580 60.0
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 5.4e-171 605.1 571 62.7
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 7.8e-170 601.3 558 60.9
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 8.6e-169 597.8 424 73.6
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.2e-167 594.0 566 60.6
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 2.4e-163 579.7 522 61.3
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 4.2e-155 552.4 580 56.4
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 3.5e-154 549.3 467 65.1
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 5.3e-150 535.4 535 59.3
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.6e-138 497.3 576 48.8
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 3.3e-136 489.6 511 57.1
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 4.0e-134 482.6 326 78.8
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 5.3e-126 455.7 411 62.3
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 4.6e-122 442.6 485 54.0
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 3.9e-121 439.5 479 53.2
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 2.0e-112 410.6 525 45.7
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 2.6e-109 400.2 373 61.4
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 2.6e-109 400.2 274 76.3
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 2.0e-104 384.0 372 58.1
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.7e-103 380.9 297 69.7
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 8.2e-103 378.6 297 67.7
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 9.1e-102 375.2 384 56.0
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 3.8e-100 369.8 318 65.1
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 9.4e-99 365.2 395 56.2
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.6e-98 364.4 355 59.2
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.6e-98 364.4 318 64.5
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 3.1e-94 350.1 367 55.3
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 2.7e-93 347.1 367 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 1.0e-92 345.1 599 38.1
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 7.2e-91 339.0 565 40.4
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 5.0e-84 316.2 261 65.9
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 2.5e-83 313.9 521 37.8
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 1.8e-81 307.8 227 72.7
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 8.9e-65 252.3 170 77.1
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.2e-50 205.3 194 62.4
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.6e-48 197.6 566 30.7
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.8e-47 193.7 188 56.4
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 1.2e-37 162.2 346 29.5
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 2.7e-37 161.0 282 42.9
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 6.0e-37 159.8 356 29.2
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 3.1e-33 147.5 117 67.5
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.9e-27 128.3 369 27.1
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 7.4e-27 126.3 107 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 8.1e-26 122.9 561 25.5
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 9.9e-24 115.9 90 64.4
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.7e-23 115.2 75 76.0
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.1e-21 108.2 351 26.2
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.3e-17 93.6 168 40.5
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 4.5e-16 90.5 356 26.4
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 7.6e-16 89.7 436 23.6
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.1e-13 81.6 163 38.0
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 3.9e-12 77.4 177 36.2
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.8e-07 60.8 226 30.5
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 3.8e-07 60.8 51 60.8
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 5.0e-07 60.5 44 63.6
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 8.5e-07 59.7 219 24.7
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 2.5e-06 58.2 228 26.3
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 3.2e-06 57.8 219 23.3


User provided reference genes

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