Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 1.4e-44 183.0 118 100.0
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 3.1e-44 181.8 118 98.3
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 6.8e-44 180.6 118 97.5
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 6.8e-44 180.6 118 97.5
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 96.6
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 96.6
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 97.5
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 97.5
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 97.5
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 97.5
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 3.4e-43 178.3 118 95.8
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 94.9
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 95.8
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.9
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.1
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.9
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 94.9
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 94.9
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 94.9
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 94.9
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 94.9
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 90.7
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 94.1
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 4.9e-42 174.5 118 94.1
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 4.9e-42 174.5 118 89.8
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 4.9e-42 174.5 118 93.2
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 92.4
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 94.1
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 94.1
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 85.6
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 94.1
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 9.2e-41 170.2 116 86.2
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 93.2
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 92.4
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 1.6e-40 169.5 118 88.1
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 93.2
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 92.4
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 92.4
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 92.4
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 90.7
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 91.5
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 91.5
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 91.5
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 91.5
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.8
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.8
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 91.5
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 91.5
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 2.3e-39 165.6 116 91.4
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 91.5
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 90.7
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 91.5
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 77.1
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 90.7
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.8
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.8
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.8
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.8
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 82.2
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.8
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 3.3e-38 161.8 118 90.7
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 7.3e-38 160.6 118 89.0
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.2e-37 159.8 118 88.1
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.2e-35 153.3 116 80.2
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 3.4e-35 151.8 118 86.4
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.3e-34 149.8 118 83.1
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 6.4e-34 147.5 116 82.8
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 1.4e-33 146.4 150 60.0
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 3.2e-33 145.2 101 95.0
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.7e-31 139.4 104 91.3
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 2.3e-31 139.0 103 89.3
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 3.3e-30 135.2 101 91.1
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 4.3e-30 134.8 102 90.2
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 5.6e-30 134.4 102 90.2
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 7.3e-30 134.0 101 91.1
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 2.6e-27 125.6 118 72.9
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 2.2e-26 122.5 90 91.1
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 1.4e-25 119.8 90 91.1
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 1.9e-25 119.4 108 71.3
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 3.5e-24 115.2 92 79.3
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 7.8e-24 114.0 92 82.6
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 2.3e-23 112.5 118 69.5
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 4.8e-21 104.8 119 58.8
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 3.1e-20 102.1 99 62.6
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 3.1e-20 102.1 58 94.8
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 9.0e-20 100.5 58 93.1
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 9.0e-20 100.5 58 93.1
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 1.2e-19 100.1 58 93.1
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.5e-19 99.8 58 91.4
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 4.5e-19 98.2 58 91.4
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.2e-18 95.9 58 89.7
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 4.9e-18 94.7 57 89.5
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 1.0e-15 87.0 44 97.7
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 1.0e-15 87.0 44 97.7
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 2.3e-15 85.9 44 97.7
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 2.3e-15 85.9 120 45.0
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 2.3e-15 85.9 44 95.5
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 1.9e-14 82.8 120 45.0
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 1.3e-13 80.1 44 88.6
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 1.3e-13 80.1 58 79.3
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 1.3e-13 80.1 96 69.8
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 3.4e-11 72.0 47 83.0


User provided reference genes

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