Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0002060 Simmondsia chinensis HOM05D008002 ORTHO05D010148 3.0e-116 421.8 199 100.0
Hund00100 Selenicereus undatus HOM05D008002 ORTHO05D010148 6.7e-60 234.6 204 58.3
Thecc.02G147800 Theobroma cacao HOM05D008002 ORTHO05D010148 4.2e-54 215.3 214 50.9
TAR376G1088 Trochodendron aralioides HOM05D008002 ORTHO05D010148 4.2e-54 215.3 197 55.8
QL11p056798 Quercus lobata HOM05D000114 ORTHO05D009898 7.2e-54 214.5 225 52.0
FvH4_2g17020 Fragaria vesca HOM05D008002 ORTHO05D010148 2.1e-53 213.0 209 54.5
FAN27G2383 Fragaria x ananassa HOM05D008002 ORTHO05D010148 3.6e-53 212.2 209 54.5
Duzib132G1147 Durio zibethinus HOM05D008002 ORTHO05D010148 4.7e-53 211.8 214 50.5
MD05G1143100 Malus domestica HOM05D008002 ORTHO05D010148 4.7e-53 211.8 207 55.1
FAN15G1289 Fragaria x ananassa HOM05D008002 ORTHO05D010148 7.9e-53 211.1 209 53.6
Gohir.A04G111300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.0e-52 210.7 215 50.2
CiPaw.05G094700 Carya illinoinensis HOM05D008002 ORTHO05D010148 1.4e-52 210.3 187 54.5
Gorai.012G138300 Gossypium raimondii HOM05D008002 ORTHO05D010148 3.0e-52 209.1 215 50.7
RcHm_v2.0_Chr6g0281201 Rosa chinensis HOM05D008002 ORTHO05D010148 3.9e-52 208.8 209 54.1
FAN24G1487 Fragaria x ananassa HOM05D008002 ORTHO05D010148 5.2e-52 208.4 202 55.4
Duzib248G0441 Durio zibethinus HOM05D008002 ORTHO05D010148 6.7e-52 208.0 213 49.8
Eucgr.I01542 Eucalyptus grandis HOM05D008002 ORTHO05D010148 8.8e-52 207.6 207 55.1
CANSAT25G0111 Cannabis sativa HOM05D008002 ORTHO05D010148 1.5e-51 206.8 202 52.5
MD10G1142900 Malus domestica HOM05D008002 ORTHO05D010148 3.3e-51 205.7 207 53.1
Gohir.D04G151600 Gossypium hirsutum HOM05D008002 ORTHO05D010148 4.4e-51 205.3 196 51.5
Prupe.8G181900 Prunus persica HOM05D008002 ORTHO05D010148 4.4e-51 205.3 207 53.6
Actinidia17988 Actinidia chinensis HOM05D008002 ORTHO05D010148 1.3e-50 203.8 200 53.0
GSVIVG01023858001 Vitis vinifera HOM05D008002 ORTHO05D010148 1.7e-50 203.4 204 52.0
Nn8g40377 Nelumbo nucifera HOM05D008002 ORTHO05D010148 1.4e-49 200.3 206 54.9
Nn2g12628 Nelumbo nucifera HOM05D008002 ORTHO05D010148 2.4e-49 199.5 206 52.4
Actinidia20583 Actinidia chinensis HOM05D008002 ORTHO05D010148 9.1e-49 197.6 200 52.0
Gohir.D02G193300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 3.5e-48 195.7 215 50.2
Cfa005392 Carpinus fangiana HOM05D008002 ORTHO05D010148 1.0e-47 194.1 199 51.8
Haze_01959 Corylus avellana HOM05D008002 ORTHO05D010148 1.3e-47 193.7 199 49.2
CsaV3_7G002100 Cucumis sativus L. HOM05D008002 ORTHO05D010148 1.3e-47 193.7 204 50.0
COL.COLO4_03847 Corchorus olitorius HOM05D008002 ORTHO05D010148 5.0e-47 191.8 214 46.3
Atru.chr5.3576 Acer truncatum HOM05D008002 ORTHO05D010148 6.5e-47 191.4 206 48.5
MELO3C015697.2 Cucumis melo HOM05D008002 ORTHO05D010148 8.5e-47 191.0 211 47.9
Gohir.A03G170200 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.9e-46 189.9 216 49.1
Dinv14183 Davidia involucrata HOM05D008002 ORTHO05D010148 4.2e-46 188.7 208 48.6
Rhsim11G0198500 Rhododendron simsii HOM05D008002 ORTHO05D010148 4.2e-46 188.7 173 52.0
Potri.009G169400 Populus trichocarpa HOM05D008002 ORTHO05D010148 7.2e-46 188.0 202 47.0
Gorai.005G216100 Gossypium raimondii HOM05D008002 ORTHO05D010148 1.6e-45 186.8 216 48.1
Sabra04G0140100 Salix brachista HOM05D008002 ORTHO05D010148 4.7e-45 185.3 202 49.5
Potri.004G208200 Populus trichocarpa HOM05D008002 ORTHO05D010148 8.0e-45 184.5 203 46.8
Sed0014792 Sechium edule HOM05D008002 ORTHO05D010148 1.0e-44 184.1 210 48.6
PGR142G3621 Punica granatum HOM05D008002 ORTHO05D010148 5.7e-43 178.3 212 47.6
Haze_01969 Corylus avellana HOM05D008002 ORTHO05D010148 1.7e-42 176.8 161 54.7
TWI75G0824 Tripterygium wilfordii HOM05D008002 ORTHO05D010148 2.2e-42 176.4 211 44.1
Gohir.D13G057750 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.4e-41 173.7 212 48.6
Gorai.013G065000 Gossypium raimondii HOM05D008002 ORTHO05D010148 1.4e-41 173.7 212 48.1
CiPaw.06G114200 Carya illinoinensis HOM05D008002 ORTHO05D010148 3.1e-41 172.6 193 47.2
Ciclev10029829m.g Citrus clementina HOM05D008002 ORTHO05D010148 7.0e-41 171.4 201 46.3
Lsat_1_v5_gn_3_48401 Lactuca sativa HOM05D008002 ORTHO05D010148 4.5e-40 168.7 137 55.5
Aqoxy6G02976 Aquilegia oxysepala HOM05D008002 ORTHO05D010148 1.3e-39 167.2 237 42.2
PSO541G1248 Papaver somniferum HOM05D008002 ORTHO05D010148 2.2e-39 166.4 187 48.7
Oeu006116.1 Olea europaea HOM05D008002 ORTHO05D010148 8.5e-39 164.5 212 42.9
Eucgr.H05000 Eucalyptus grandis HOM05D008002 ORTHO05D010148 3.2e-38 162.5 192 44.8
Carub.0007s0013 Capsella rubella HOM05D008002 ORTHO05D010148 2.2e-34 149.8 145 49.7
AT4G38213 Arabidopsis thaliana HOM05D008002 ORTHO05D010148 3.7e-34 149.1 190 43.7
ClCG02G003270 Citrullus lanatus HOM05D008002 ORTHO05D010148 7.0e-33 144.8 135 51.1
Sp7g37530 Schrenkiella parvula HOM05D008002 ORTHO05D010148 1.2e-32 144.1 151 48.3
Thhalv10027398m.g Eutrema salsugineum HOM05D008002 ORTHO05D010148 1.6e-32 143.7 190 41.6
SEGI_35818 Sequoiadendron giganteum HOM05D008002 ORTHO05D010148 2.7e-32 142.9 137 48.2
CSS0003373 Camellia sinensis var. sinensis HOM05D008002 ORTHO05D010148 3.0e-28 129.4 109 56.0
Zm00001eb035270 Zea mays HOM05D008002 ORTHO05D010148 5.2e-28 128.6 161 44.1
CDE10G0514 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 4.9e-26 122.1 180 42.8
PSO675G9248 Papaver somniferum HOM05D008002 ORTHO05D010148 1.2e-24 117.5 184 40.8
HPP92_007470 Vanilla planifolia HOM05D008002 ORTHO05D010148 7.8e-24 114.8 190 37.4
AL7G10120 Arabidopsis lyrata HOM05D008002 ORTHO05D010148 2.9e-23 112.8 119 47.9
HanXRQChr15g0479771 Helianthus annuus HOM05D008002 ORTHO05D010148 3.8e-23 112.5 106 48.1
Os08g0512100 Oryza sativa ssp. japonica HOM05D008002 ORTHO05D010148 1.1e-22 110.9 175 37.7
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.9e-22 110.2 100 56.0
HanXRQChr15g0490081 Helianthus annuus HOM05D008002 ORTHO05D010148 4.3e-22 109.0 108 46.3
ATR0763G180 Amborella trichopoda HOM05D008002 ORTHO05D010148 3.6e-21 105.9 112 49.1
TAR628G1479 Trochodendron aralioides HOM05D008002 ORTHO05D010148 3.0e-20 102.8 88 55.7
MBI01_g17256_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.2e-20 102.1 87 58.6
CARHR293990 Cardamine hirsuta HOM05D008002 ORTHO05D010148 2.9e-18 96.3 77 53.2
CDE10G0941 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 2.0e-16 90.1 89 52.8
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 2.0e-16 90.1 91 51.6
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.9e-16 88.6 90 51.1
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 1.0e-15 87.8 92 51.1
Gohir.A13G064166 Gossypium hirsutum HOM05D008002 ORTHO05D010148 5.2e-12 75.5 57 59.6
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 3.2e-09 66.2 65 47.7


User provided reference genes

Program Settings