Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 1.4e-70 269.6 144 100.0
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 1.9e-43 179.5 144 69.4
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 3.0e-41 172.2 144 65.3
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 3.9e-41 171.8 144 64.6
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 5.0e-41 171.4 142 66.2
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 1.5e-40 169.9 144 63.9
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 2.5e-40 169.1 144 67.4
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 3.3e-40 168.7 144 64.6
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 1.6e-39 166.4 143 64.3
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 2.1e-39 166.0 148 66.9
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 2.1e-39 166.0 144 64.6
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 1.1e-38 163.7 144 64.6
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 1.8e-38 162.9 147 66.0
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 1.5e-37 159.8 144 63.2
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 2.6e-37 159.1 147 63.9
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 4.4e-37 158.3 146 63.0
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 5.8e-37 157.9 144 63.2
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 7.5e-37 157.5 141 62.4
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 7.5e-37 157.5 149 63.1
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 3.7e-36 155.2 144 61.1
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 6.4e-36 154.5 144 62.5
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 1.1e-35 153.7 147 60.5
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 2.4e-35 152.5 146 61.6
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 3.2e-35 152.1 144 61.8
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 3.2e-35 152.1 144 57.6
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 5.4e-35 151.4 144 60.4
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 7.1e-35 151.0 146 60.3
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 1.6e-34 149.8 144 65.3
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 2.1e-34 149.4 145 62.1
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 2.7e-34 149.1 144 57.6
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 2.7e-34 149.1 141 59.6
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 3.5e-34 148.7 144 59.0
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 4.6e-34 148.3 144 59.0
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 4.6e-34 148.3 144 59.7
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 6.0e-34 147.9 144 59.0
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 6.0e-34 147.9 146 59.6
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 7.8e-34 147.5 146 59.6
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 1.3e-33 146.7 144 59.7
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 1.3e-33 146.7 147 59.9
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 1.7e-33 146.4 131 61.8
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 1.7e-33 146.4 142 59.9
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.7e-33 146.4 144 60.4
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 3.0e-33 145.6 144 59.7
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 3.0e-33 145.6 146 58.9
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 3.9e-33 145.2 145 59.3
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 6.6e-33 144.4 144 57.6
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 8.6e-33 144.1 146 61.0
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 1.9e-32 142.9 135 60.7
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 1.9e-32 142.9 128 63.3
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 3.3e-32 142.1 145 60.0
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 5.6e-32 141.4 144 59.0
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 9.5e-32 140.6 153 56.2
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 6.2e-31 137.9 99 75.8
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 6.2e-31 137.9 145 59.3
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 1.1e-30 137.1 151 57.0
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 1.1e-30 137.1 145 60.0
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 1.1e-30 137.1 147 56.5
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 1.4e-30 136.7 144 57.6
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 1.8e-30 136.3 145 58.6
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 1.8e-30 136.3 143 53.8
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 3.1e-30 135.6 144 56.2
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 3.1e-30 135.6 139 59.0
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 5.2e-30 134.8 145 57.9
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 6.8e-30 134.4 145 55.9
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 6.8e-30 134.4 106 67.0
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 8.9e-30 134.0 94 78.7
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 1.2e-29 133.7 144 56.2
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.5e-29 133.3 150 56.7
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 1.5e-29 133.3 82 82.9
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 2.6e-29 132.5 131 58.8
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 3.4e-29 132.1 148 54.1
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 3.4e-29 132.1 148 54.1
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 4.4e-29 131.7 131 58.8
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 7.6e-29 131.0 148 54.7
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 7.6e-29 131.0 155 54.2
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 9.9e-29 130.6 162 53.7
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 9.9e-29 130.6 153 52.9
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 9.9e-29 130.6 153 52.9
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 1.3e-28 130.2 145 54.5
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 6.4e-28 127.9 154 53.9
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 6.4e-28 127.9 143 52.4
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 1.1e-27 127.1 153 50.3
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 1.4e-27 126.7 145 55.2
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 1.9e-27 126.3 147 54.4
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 3.2e-27 125.6 106 60.4
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 3.2e-27 125.6 135 54.1
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 3.2e-27 125.6 151 53.0
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 5.4e-27 124.8 153 51.6
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 5.4e-27 124.8 131 54.2
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 1.2e-26 123.6 149 52.3
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 1.2e-26 123.6 136 53.7
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 1.2e-26 123.6 149 53.7
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 2.7e-26 122.5 104 63.5
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 3.5e-26 122.1 135 54.1
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 3.5e-26 122.1 82 74.4
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 7.8e-26 120.9 150 53.3
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 1.3e-25 120.2 81 77.8
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 2.3e-25 119.4 111 59.5
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 1.9e-24 116.3 85 67.1
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 6.2e-23 111.3 116 51.7
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 2.0e-21 106.3 78 73.1
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 2.6e-21 105.9 78 62.8
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 1.1e-19 100.5 82 59.8
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 6.0e-18 94.7 141 44.7
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 3.9e-17 92.0 113 47.8
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 1.5e-16 90.1 84 57.1
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 4.8e-15 85.1 101 45.5
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 6.2e-15 84.7 84 50.0
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.4e-14 83.6 110 48.2
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 2.4e-14 82.8 77 57.1
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 2.4e-14 82.8 82 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 5.3e-14 81.6 82 51.2
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 2.6e-13 79.3 55 74.5
SalBow6G4602 Salvia bowleyana HOM05D010989 ORTHO05D013112 1.1e-11 73.9 119 42.9
TAR628G1275 Trochodendron aralioides HOM05D000049 ORTHO05D008785 4.6e-10 68.6 77 49.4
COL.COLO4_15744 Corchorus olitorius HOM05D001416 ORTHO05D002549 9.6e-08 60.8 32 90.6
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 6.2e-07 58.2 57 50.9


User provided reference genes

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