Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 1.4e-67 260.0 182 100.0
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 8.6e-46 187.6 136 79.4
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 3.1e-43 179.1 134 73.9
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 7.5e-42 174.5 134 73.1
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 1.3e-41 173.7 135 74.1
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 1.7e-41 173.3 134 73.1
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 2.9e-41 172.6 134 74.6
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 2.9e-41 172.6 134 74.6
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 2.9e-41 172.6 134 74.6
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 3.7e-41 172.2 179 64.8
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.1e-40 170.6 134 70.1
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.1e-40 170.6 134 71.6
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 1.4e-40 170.2 181 73.5
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 2.4e-40 169.5 134 72.4
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 2.7e-39 166.0 134 70.9
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 4.6e-39 165.2 132 72.0
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 6.0e-39 164.9 134 72.4
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 6.0e-39 164.9 134 70.9
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 6.0e-39 164.9 134 71.6
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 7.8e-39 164.5 106 81.1
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 7.8e-39 164.5 132 72.0
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 1.3e-38 163.7 101 85.1
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 1.3e-38 163.7 133 72.9
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 1.3e-38 163.7 134 71.6
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 1.3e-38 163.7 132 72.7
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 1.7e-38 163.3 138 67.4
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 2.3e-38 162.9 134 72.4
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 6.6e-38 161.4 134 71.6
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 8.6e-38 161.0 140 69.3
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.1e-37 160.6 130 67.7
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 1.5e-37 160.2 134 69.4
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 1.5e-37 160.2 138 65.9
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 1.5e-37 160.2 134 70.9
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.9e-37 159.8 130 69.2
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 3.3e-37 159.1 121 76.9
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 3.3e-37 159.1 138 65.2
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 3.3e-37 159.1 129 69.0
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 3.3e-37 159.1 129 69.0
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 4.3e-37 158.7 134 68.7
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 4.3e-37 158.7 129 66.7
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 4.3e-37 158.7 127 67.7
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 4.3e-37 158.7 130 68.5
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 4.3e-37 158.7 129 69.0
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 5.6e-37 158.3 124 71.0
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 9.5e-37 157.5 130 67.7
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 9.5e-37 157.5 137 68.6
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 1.6e-36 156.8 94 85.1
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.6e-36 156.8 134 68.7
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 2.1e-36 156.4 122 72.1
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 2.8e-36 156.0 132 70.5
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 6.2e-36 154.8 135 65.2
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 6.2e-36 154.8 109 74.3
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 8.1e-36 154.5 138 65.2
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 8.1e-36 154.5 125 66.4
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.1e-35 154.1 110 73.6
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.8e-35 153.3 121 76.0
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.8e-35 153.3 121 76.0
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 2.3e-35 152.9 122 73.8
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 2.3e-35 152.9 133 68.4
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 3.1e-35 152.5 132 63.6
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 1.2e-34 150.6 124 72.6
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 1.5e-34 150.2 88 89.8
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.5e-34 150.2 88 89.8
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.5e-34 150.2 88 89.8
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.5e-34 150.2 88 89.8
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 2.0e-34 149.8 132 65.9
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 2.6e-34 149.4 133 65.4
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 3.4e-34 149.1 179 61.5
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 3.4e-34 149.1 130 67.7
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 3.4e-34 149.1 111 71.2
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 4.4e-34 148.7 115 70.4
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 7.6e-34 147.9 125 68.8
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 9.9e-34 147.5 134 65.7
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 9.9e-34 147.5 134 65.7
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 9.9e-34 147.5 134 65.7
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 9.9e-34 147.5 134 65.7
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 9.9e-34 147.5 116 70.7
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 9.9e-34 147.5 134 65.7
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 1.3e-33 147.1 134 64.9
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 2.2e-33 146.4 136 61.8
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 2.2e-33 146.4 134 64.9
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 2.9e-33 146.0 118 71.2
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 3.8e-33 145.6 174 53.4
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 4.9e-33 145.2 134 64.9
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 1.1e-32 144.1 130 66.2
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 1.4e-32 143.7 137 64.2
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 1.4e-32 143.7 129 64.3
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 2.4e-32 142.9 157 57.3
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 9.2e-32 141.0 140 60.7
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 1.6e-31 140.2 132 64.4
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 2.7e-31 139.4 131 64.1
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 2.7e-31 139.4 123 65.0
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 4.6e-31 138.7 134 62.7
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 4.6e-31 138.7 134 62.7
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 4.6e-31 138.7 130 63.8
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 6.0e-31 138.3 133 62.4
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 7.8e-31 137.9 134 61.9
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 7.8e-31 137.9 185 51.4
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 1.7e-30 136.7 111 66.7
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 3.0e-30 136.0 109 69.7
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 3.0e-30 136.0 134 60.4
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 6.6e-30 134.8 184 60.3
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 6.6e-30 134.8 134 59.0
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 8.6e-30 134.4 78 85.9
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 7.3e-29 131.3 186 45.7
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 9.6e-29 131.0 110 65.5
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 2.8e-28 129.4 96 71.9
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 4.7e-28 128.6 101 72.3
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 8.1e-28 127.9 113 63.7
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 1.8e-27 126.7 96 69.8
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 2.4e-27 126.3 71 91.5
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 1.5e-26 123.6 124 62.9
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 1.5e-26 123.6 113 62.8
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.5e-26 123.6 145 53.1
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 1.7e-25 120.2 101 69.3
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 1.7e-25 120.2 98 68.4
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 1.9e-21 106.7 109 58.7
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 2.5e-21 106.3 99 63.6
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 2.8e-20 102.8 227 36.6
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 1.1e-19 100.9 88 62.5
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 1.8e-19 100.1 92 60.9
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.2e-18 97.4 92 58.7
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 2.6e-18 96.3 117 52.1
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 6.4e-17 91.7 137 48.2
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 2.1e-12 76.6 114 43.9
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 2.8e-12 76.3 92 52.2
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 3.1e-11 72.8 83 55.4
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 5.3e-11 72.0 59 69.5
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 6.9e-11 71.6 42 88.1
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 3.5e-07 59.3 67 47.8
Thecc.04G122800 Theobroma cacao HOM05D006149 ORTHO05D007341 6.7e-06 55.1 39 64.1


User provided reference genes

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