Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 5.1e-90 334.3 162 100.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.7e-46 187.6 108 78.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.7e-46 187.6 108 78.7
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 6.5e-45 184.5 107 76.6
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.4e-44 183.3 107 75.7
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 3.2e-44 182.2 106 77.4
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 5.5e-44 181.4 106 78.3
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 9.4e-44 180.6 103 77.7
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 1.2e-43 180.3 108 75.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.2e-43 180.3 106 75.5
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.6e-43 179.9 106 77.4
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.6e-43 179.9 106 76.4
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 1.6e-43 179.9 104 77.9
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 2.7e-43 179.1 106 77.4
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.7e-43 179.1 105 77.1
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.7e-43 179.1 105 77.1
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.7e-43 179.1 106 76.4
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.7e-43 179.1 106 76.4
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 3.6e-43 178.7 104 76.9
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 3.6e-43 178.7 106 75.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.6e-43 178.7 108 73.1
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 4.6e-43 178.3 108 74.1
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 6.1e-43 177.9 103 74.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 6.1e-43 177.9 103 75.7
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.1e-43 177.9 106 75.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 6.1e-43 177.9 106 75.5
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.1e-43 177.9 101 80.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 7.9e-43 177.6 105 76.2
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.9e-43 177.6 105 76.2
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.9e-43 177.6 106 75.5
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.4e-42 176.8 106 74.5
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.4e-42 176.8 105 77.1
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 2.3e-42 176.0 108 75.9
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.3e-42 176.0 105 76.2
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 2.3e-42 176.0 105 75.2
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.3e-42 176.0 106 73.6
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 3.0e-42 175.6 101 76.2
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 3.0e-42 175.6 105 74.3
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.0e-42 175.6 106 75.5
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 3.9e-42 175.3 105 75.2
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 3.9e-42 175.3 105 75.2
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 3.9e-42 175.3 106 73.6
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 3.9e-42 175.3 105 73.3
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 3.9e-42 175.3 108 73.1
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 5.1e-42 174.9 105 75.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 6.7e-42 174.5 106 73.6
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 6.7e-42 174.5 104 74.0
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 6.7e-42 174.5 106 75.5
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 8.8e-42 174.1 107 72.0
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 8.8e-42 174.1 105 73.3
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 8.8e-42 174.1 105 74.3
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.8e-42 174.1 105 75.2
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 1.1e-41 173.7 104 72.1
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.5e-41 173.3 101 76.2
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.5e-41 173.3 108 73.1
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.5e-41 173.3 104 75.0
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.0e-41 172.9 105 74.3
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.0e-41 172.9 105 72.4
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.0e-41 172.9 100 78.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.0e-41 172.9 108 72.2
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 3.3e-41 172.2 103 73.8
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.3e-41 172.2 108 71.3
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 5.7e-41 171.4 105 71.4
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 5.7e-41 171.4 105 71.4
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 5.7e-41 171.4 105 71.4
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 5.7e-41 171.4 105 71.4
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 5.7e-41 171.4 105 71.4
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.7e-41 171.4 105 73.3
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 5.7e-41 171.4 107 71.0
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 5.7e-41 171.4 106 72.6
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 7.4e-41 171.0 104 74.0
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 9.7e-41 170.6 105 70.5
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 9.7e-41 170.6 107 72.0
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 9.7e-41 170.6 107 72.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 9.7e-41 170.6 105 70.5
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.3e-40 170.2 108 70.4
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.3e-40 170.2 106 71.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.7e-40 169.9 105 70.5
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-40 169.9 105 70.5
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.7e-40 169.9 105 71.4
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.7e-40 169.9 106 72.6
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.7e-40 169.9 105 71.4
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 1.7e-40 169.9 131 63.4
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.2e-40 169.5 105 70.5
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.2e-40 169.5 105 70.5
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 2.8e-40 169.1 106 70.8
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 3.7e-40 168.7 106 70.8
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.8e-40 168.3 106 69.8
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.8e-40 168.3 108 70.4
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 6.3e-40 167.9 105 71.4
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 8.2e-40 167.5 104 73.1
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 8.2e-40 167.5 109 72.5
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.2e-40 167.5 106 70.8
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.1e-39 167.2 108 69.4
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.1e-39 167.2 103 72.8
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.4e-39 166.8 105 68.6
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.4e-39 166.8 105 68.6
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.4e-39 166.8 105 68.6
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.4e-39 166.8 105 68.6
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.4e-39 166.8 105 68.6
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.8e-39 166.4 105 70.5
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 3.1e-39 165.6 99 72.7
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.1e-39 165.6 105 69.5
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 4.1e-39 165.2 100 71.0
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 4.1e-39 165.2 98 76.5
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.9e-39 164.5 101 72.3
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 6.9e-39 164.5 102 72.5
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 9.1e-39 164.1 105 68.6
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 9.1e-39 164.1 102 71.6
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.2e-38 163.7 122 63.9
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.5e-38 163.3 105 70.5
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.7e-37 159.8 127 60.6
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 2.9e-37 159.1 101 70.3
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 3.8e-37 158.7 106 68.9
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.6e-35 153.3 106 66.0
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.6e-35 152.1 103 65.0
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 3.6e-35 152.1 105 67.6
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 4.7e-35 151.8 140 52.9
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 3.3e-33 145.6 91 75.8
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.4e-31 140.2 169 44.4
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.2e-29 132.9 81 72.8
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.1e-28 130.6 107 53.3
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.9e-28 129.8 133 54.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 8.0e-27 124.4 99 55.6
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.0e-25 119.8 98 55.1
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 2.6e-25 119.4 109 56.9
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 9.1e-23 110.9 105 51.4
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 5.9e-22 108.2 103 48.5
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.7e-21 106.7 90 51.1
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 2.2e-21 106.3 100 49.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.5e-21 104.8 103 50.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.9e-20 103.2 82 59.8
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 3.6e-19 99.0 114 46.5
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-19 98.2 105 45.7
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 6.8e-18 94.7 139 40.3
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.6e-17 92.8 57 78.9
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.6e-17 92.8 51 74.5
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.4e-17 92.0 51 74.5
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.4e-15 86.3 79 54.4
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 3.1e-15 85.9 55 74.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.2e-14 84.0 51 64.7
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 7.7e-14 81.3 51 66.7
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 1.3e-13 80.5 84 46.4
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 5.0e-13 78.6 55 61.8
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 9.5e-12 74.3 75 52.0
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 8.0e-11 71.2 46 63.0
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 6.3e-08 61.6 96 34.4
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 8.3e-08 61.2 83 45.8


User provided reference genes

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