Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 1.1e-72 276.6 140 100.0
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 4.6e-47 191.4 132 76.5
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.8e-39 164.1 98 82.7
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.1e-38 161.4 199 49.7
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.8e-36 155.6 225 47.6
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 8.1e-36 154.1 79 92.4
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 3.1e-35 152.1 76 92.1
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.0e-34 149.4 92 81.5
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 2.6e-34 149.1 225 46.7
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.4e-34 148.7 225 46.2
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 6.4e-33 144.4 229 45.4
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 8.4e-33 144.1 225 46.7
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 8.4e-33 144.1 229 45.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.1e-32 143.7 228 44.7
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.4e-32 143.3 225 46.2
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.4e-32 143.3 229 45.4
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 4.2e-32 141.7 229 45.4
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.2e-32 141.7 230 44.8
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 5.4e-32 141.4 230 44.8
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 5.4e-32 141.4 230 44.8
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 5.4e-32 141.4 230 44.8
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 7.1e-32 141.0 92 77.2
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 7.1e-32 141.0 230 44.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.6e-31 139.8 230 44.3
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.5e-31 138.7 225 44.4
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 3.5e-31 138.7 227 43.6
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.5e-31 138.7 229 44.1
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.5e-31 138.7 229 44.1
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 3.5e-31 138.7 65 98.5
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 4.6e-31 138.3 229 44.1
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.0e-31 137.9 92 76.1
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 7.9e-31 137.5 229 43.7
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 7.9e-31 137.5 230 43.5
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 7.9e-31 137.5 230 43.5
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.0e-30 137.1 229 44.1
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 3.9e-30 135.2 233 43.8
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 3.9e-30 135.2 226 43.4
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 3.9e-30 135.2 225 44.4
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 5.1e-30 134.8 232 44.0
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 5.1e-30 134.8 230 43.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 6.7e-30 134.4 228 43.0
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 6.7e-30 134.4 229 43.2
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 6.7e-30 134.4 229 42.8
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.1e-29 133.7 225 43.1
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.5e-29 133.3 238 41.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.9e-29 132.9 92 73.9
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 2.5e-29 132.5 225 43.1
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 3.3e-29 132.1 229 42.4
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 3.3e-29 132.1 225 43.1
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 3.3e-29 132.1 225 42.7
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 3.3e-29 132.1 225 43.1
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 4.3e-29 131.7 225 42.7
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 5.6e-29 131.3 221 43.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 5.6e-29 131.3 225 42.7
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 5.6e-29 131.3 222 43.7
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 7.4e-29 131.0 92 73.9
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 7.4e-29 131.0 92 73.9
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 7.4e-29 131.0 222 42.8
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 7.4e-29 131.0 223 43.0
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 7.4e-29 131.0 92 73.9
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 7.4e-29 131.0 225 42.7
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 9.6e-29 130.6 214 43.5
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 9.6e-29 130.6 225 42.7
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 9.6e-29 130.6 92 72.8
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.3e-28 130.2 225 42.7
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.6e-28 129.8 92 72.8
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.6e-28 129.8 92 72.8
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.6e-28 129.8 225 42.2
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.6e-28 129.8 225 42.7
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.6e-28 129.8 225 43.1
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.6e-28 129.8 92 72.8
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 72.8
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 72.8
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 2.1e-28 129.4 92 71.7
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 2.1e-28 129.4 228 40.8
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.8e-28 129.0 229 43.7
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.8e-28 129.0 92 72.8
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 3.6e-28 128.6 92 71.7
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 3.6e-28 128.6 92 71.7
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 4.8e-28 128.3 92 71.7
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.8e-28 128.3 92 71.7
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.8e-28 128.3 92 71.7
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 4.8e-28 128.3 92 71.7
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.2e-28 127.9 92 70.7
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 6.2e-28 127.9 92 70.7
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 6.2e-28 127.9 223 42.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 6.2e-28 127.9 92 70.7
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 8.1e-28 127.5 225 42.2
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.1e-27 127.1 225 41.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 1.4e-27 126.7 225 42.7
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.4e-27 126.7 225 41.8
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.4e-27 126.7 225 41.8
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.8e-27 126.3 92 70.7
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 3.1e-27 125.6 224 41.1
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 4.0e-27 125.2 92 70.7
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.2e-26 123.6 92 68.5
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 9.9e-26 120.6 92 66.3
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.8e-25 118.6 86 70.9
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.4e-24 116.7 92 65.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.2e-24 115.5 92 69.6
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 4.2e-24 115.2 60 86.7
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 3.0e-22 109.0 92 58.7
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.4e-19 100.1 193 40.4
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 3.1e-19 99.0 92 55.4
Actinidia08227 Actinidia chinensis HOM05D004278 ORTHO05D021139 1.0e-17 94.0 77 64.9
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 1.1e-13 80.5 35 97.1
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 7.4e-13 77.8 130 43.1
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.1e-11 73.9 197 33.5
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.2e-10 70.5 63 58.7
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.0e-09 67.4 193 33.2


User provided reference genes

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