Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 3.5e-236 822.0 425 100.0
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 7.7e-82 309.3 429 46.2
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 2.2e-76 291.2 427 45.9
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.9e-72 278.1 416 42.8
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 1.6e-63 248.4 426 39.7
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 1.9e-59 235.0 422 40.3
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 7.0e-59 233.0 338 43.8
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 2.7e-58 231.1 425 36.9
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 1.7e-57 228.4 326 38.3
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 9.5e-56 222.6 335 42.1
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 1.2e-55 222.2 335 42.1
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 2.1e-55 221.5 338 41.7
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 2.1e-55 221.5 335 42.1
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 2.1e-55 221.5 425 37.9
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 1.1e-54 219.2 426 37.1
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 4.0e-54 217.2 354 40.7
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 5.2e-54 216.9 382 39.3
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 8.9e-54 216.1 337 43.0
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 7.5e-53 213.0 432 38.2
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 1.3e-49 202.2 308 36.7
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 8.6e-49 199.5 325 40.0
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 9.5e-48 196.1 429 34.7
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 9.5e-48 196.1 356 37.4
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 4.4e-45 187.2 331 37.8
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 4.4e-45 187.2 325 37.8
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 6.4e-44 183.3 334 37.4
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 7.1e-43 179.9 426 33.8
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 7.8e-42 176.4 322 37.9
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 2.3e-41 174.9 328 37.5
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 3.3e-40 171.0 329 37.1
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 5.6e-40 170.2 339 39.5
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 2.6e-29 134.8 327 33.3
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 2.6e-29 134.8 327 33.0
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 5.4e-27 127.1 341 31.1
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 2.3e-25 121.7 339 33.6
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 8.7e-25 119.8 336 33.0
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 3.6e-23 114.4 439 28.7
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 2.9e-20 104.8 322 31.4
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 4.9e-20 104.0 145 38.6
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 7.1e-19 100.1 154 39.6
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 9.3e-19 99.8 240 35.0
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.6e-15 89.0 337 30.0
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 4.0e-14 84.3 192 27.1
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.2e-12 78.6 258 22.5
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 2.9e-12 78.2 191 26.2
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 3.8e-12 77.8 240 22.5
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 4.2e-11 74.3 206 25.2
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 4.2e-11 74.3 182 24.7
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 4.2e-11 74.3 236 22.5
Lj3C325T0 Lonicera japonica HOM05D008657 ORTHO05D010869 1.2e-10 72.8 87 42.5
MBI16_g32672_MAGBIO Magnolia biondii HOM05D008483 ORTHO05D010726 3.5e-10 71.2 188 27.1
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 3.5e-10 71.2 240 26.2
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 6.0e-10 70.5 197 24.4
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 7.9e-10 70.1 168 28.0
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.0e-09 69.7 238 26.9
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 1.3e-09 69.3 170 28.2
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 1.8e-09 68.9 169 25.4
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 2.3e-09 68.6 224 22.3
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 2.3e-09 68.6 248 22.2
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 2.3e-09 68.6 231 25.1
GSVIVG01022790001 Vitis vinifera HOM05D008483 ORTHO05D010726 5.1e-09 67.4 260 25.0
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 6.7e-09 67.0 203 24.6
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 6.7e-09 67.0 232 22.4
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 8.7e-09 66.6 253 21.3
ATR0751G052 Amborella trichopoda HOM05D006174 ORTHO05D007987 1.1e-08 66.2 220 27.3
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.1e-08 66.2 226 23.5
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.5e-08 65.9 175 22.9
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 1.5e-08 65.9 169 28.4
GSVIVG01013571001 Vitis vinifera HOM05D007128 ORTHO05D009059 1.5e-08 65.9 356 24.4
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 1.9e-08 65.5 199 23.6
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.9e-08 65.5 175 22.9
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 2.5e-08 65.1 215 22.3
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 2.5e-08 65.1 186 23.1
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.5e-08 65.1 244 21.7
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 2.5e-08 65.1 247 25.9
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 3.3e-08 64.7 203 24.1
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 3.3e-08 64.7 247 26.3
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 4.3e-08 64.3 219 24.7
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 4.3e-08 64.3 253 20.6
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 4.3e-08 64.3 197 23.4
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 5.7e-08 63.9 194 24.2
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 5.7e-08 63.9 194 24.2
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 5.7e-08 63.9 176 22.2
Nitab4.5_0005793g0030 Nicotiana tabacum HOM05D007956 ORTHO05D010152 5.7e-08 63.9 303 21.8
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.3e-07 62.8 238 23.9
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.3e-07 62.8 197 22.8
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 1.6e-07 62.4 186 26.3
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 1.6e-07 62.4 166 24.7
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 2.1e-07 62.0 282 19.9
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 2.1e-07 62.0 143 27.3
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 2.1e-07 62.0 208 23.6
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 2.1e-07 62.0 171 22.2
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 2.8e-07 61.6 217 21.2
Sc16g0009020 Simmondsia chinensis HOM05D006888 ORTHO05D008371 2.8e-07 61.6 171 27.5
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 3.7e-07 61.2 207 23.7
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 3.7e-07 61.2 273 23.8
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 4.8e-07 60.8 251 22.3
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 4.8e-07 60.8 201 21.4
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 4.8e-07 60.8 145 25.5
Nn1g01012 Nelumbo nucifera HOM05D007496 ORTHO05D009479 4.8e-07 60.8 175 27.4
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 4.8e-07 60.8 203 22.7
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 4.8e-07 60.8 155 29.0
RcHm_v2.0_Chr4g0420811 Rosa chinensis HOM05D006174 ORTHO05D007987 6.3e-07 60.5 287 23.7
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 8.2e-07 60.1 250 22.4
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 8.2e-07 60.1 192 25.5
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 8.2e-07 60.1 187 23.0
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 8.2e-07 60.1 201 22.4
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 8.2e-07 60.1 131 25.2
Gohir.D03G069200 Gossypium hirsutum HOM05D000424 ORTHO05D000355 1.1e-06 59.7 213 23.0
SGA_v2.0_scaffold496G52473 Striga asiatica HOM05D007455 ORTHO05D009431 1.1e-06 59.7 169 27.8
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 1.4e-06 59.3 219 23.3
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.4e-06 59.3 119 30.3
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 1.4e-06 59.3 109 27.5
SEGI_04891 Sequoiadendron giganteum HOM05D006888 ORTHO05D008371 1.4e-06 59.3 216 25.0
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 1.4e-06 59.3 235 20.0
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 1.8e-06 58.9 225 23.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.8e-06 58.9 138 25.4
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 1.8e-06 58.9 190 24.2
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 1.8e-06 58.9 173 24.3
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 1.8e-06 58.9 210 24.3
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 2.4e-06 58.5 177 23.2
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 2.4e-06 58.5 205 24.4
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 2.4e-06 58.5 202 26.2
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 2.4e-06 58.5 239 21.3
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 2.4e-06 58.5 178 23.6
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 2.4e-06 58.5 110 25.5
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 2.4e-06 58.5 206 23.3
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 3.1e-06 58.2 185 25.9
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 3.1e-06 58.2 182 23.6
Rhsim04G0199600 Rhododendron simsii HOM05D000424 ORTHO05D000355 3.1e-06 58.2 237 22.4
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.1e-06 58.2 179 24.0
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 3.1e-06 58.2 235 20.4
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 3.1e-06 58.2 197 23.9
Zm00001eb059330 Zea mays HOM05D011046 ORTHO05D013342 3.1e-06 58.2 247 24.7
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 4.1e-06 57.8 176 22.7
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 4.1e-06 57.8 196 21.9
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 4.1e-06 57.8 173 23.1
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 4.1e-06 57.8 266 19.9
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 5.3e-06 57.4 194 22.2
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 5.3e-06 57.4 198 20.2
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 5.3e-06 57.4 231 23.4
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 6.9e-06 57.0 167 22.8
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 6.9e-06 57.0 197 22.8
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 6.9e-06 57.0 159 23.3
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 6.9e-06 57.0 283 22.3
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 6.9e-06 57.0 249 21.7
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 6.9e-06 57.0 205 18.5
Prupe.1G342600 Prunus persica HOM05D007496 ORTHO05D009479 6.9e-06 57.0 140 26.4
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 9.0e-06 56.6 213 22.1
Haze_01569 Corylus avellana HOM05D007496 ORTHO05D009479 9.0e-06 56.6 140 26.4
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 9.0e-06 56.6 181 24.9
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 9.0e-06 56.6 172 22.7
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 9.0e-06 56.6 185 22.2
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 9.0e-06 56.6 212 23.1
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 9.0e-06 56.6 198 24.2
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 9.0e-06 56.6 194 22.7
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 9.0e-06 56.6 194 22.7


User provided reference genes

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