Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 5.2e-235 817.4 424 100.0
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 2.0e-162 576.2 421 68.9
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 2.4e-160 569.3 426 70.7
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 3.1e-155 552.4 434 66.4
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 2.0e-154 549.7 439 64.7
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 3.4e-154 548.9 432 66.0
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.0e-153 547.4 434 65.4
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 1.4e-152 543.5 426 66.0
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 3.2e-152 542.3 428 66.4
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.6e-151 540.0 431 64.5
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 2.1e-151 539.7 433 66.1
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 7.9e-151 537.7 427 66.3
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 3.9e-150 535.4 427 65.8
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 1.5e-149 533.5 427 65.8
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 3.3e-149 532.3 466 62.2
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.3e-149 532.3 427 66.3
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.3e-149 532.3 427 66.0
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 4.3e-149 531.9 428 64.5
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 7.4e-149 531.2 425 64.0
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.3e-148 530.4 433 65.4
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.6e-148 530.0 434 66.1
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.6e-148 530.0 430 63.5
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.2e-148 529.6 427 65.8
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 2.2e-148 529.6 427 65.3
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 2.2e-148 529.6 431 65.4
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 1.8e-147 526.6 426 65.5
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.4e-147 526.2 445 62.0
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.4e-147 526.2 444 63.7
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 5.3e-147 525.0 427 63.7
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 5.3e-147 525.0 427 63.7
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 9.0e-147 524.2 444 63.5
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 9.0e-147 524.2 427 65.1
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 3.4e-146 522.3 429 64.6
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 3.4e-146 522.3 423 63.8
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 4.5e-146 521.9 447 62.9
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 7.6e-146 521.2 427 63.0
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 7.6e-146 521.2 427 64.9
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 5.0e-145 518.5 427 64.4
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 5.0e-145 518.5 427 64.2
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 5.0e-145 518.5 427 64.2
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 1.9e-144 516.5 427 63.9
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 2.5e-144 516.2 426 62.7
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 5.5e-144 515.0 429 62.5
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 7.2e-144 514.6 423 64.8
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 7.2e-144 514.6 426 64.3
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 3.9e-142 508.8 419 63.5
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 6.7e-142 508.1 427 62.8
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 1.5e-141 506.9 422 63.0
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.9e-141 506.5 419 61.8
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 2.5e-141 506.1 431 61.5
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 3.3e-141 505.8 432 63.0
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 7.4e-141 504.6 435 63.4
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 7.4e-141 504.6 445 61.6
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 1.8e-139 500.0 420 60.5
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 2.4e-139 499.6 428 62.4
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 3.1e-139 499.2 419 60.4
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 3.1e-139 499.2 427 62.5
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 3.1e-139 499.2 428 61.7
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 6.9e-139 498.0 422 62.1
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 2.0e-138 496.5 418 62.2
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 3.4e-138 495.7 419 59.9
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 7.7e-138 494.6 421 59.4
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 1.0e-137 494.2 430 60.5
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.3e-137 493.8 419 60.9
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.7e-137 493.4 426 60.8
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 2.9e-137 492.7 419 59.4
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 5.0e-137 491.9 421 58.7
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 6.5e-137 491.5 419 59.4
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 1.1e-136 490.7 419 59.4
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.1e-136 490.7 427 60.4
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.1e-136 490.7 420 61.2
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.4e-136 490.3 421 59.6
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.9e-136 490.0 420 61.4
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.9e-136 490.0 401 64.8
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 3.2e-136 489.2 421 61.5
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 1.2e-135 487.3 421 58.9
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 1.6e-135 486.9 426 60.3
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 3.6e-135 485.7 376 68.4
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 1.8e-134 483.4 433 58.4
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 8.8e-134 481.1 421 58.2
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 1.5e-133 480.3 399 62.7
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 1.4e-131 473.8 426 58.0
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.2e-130 470.7 364 67.0
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 1.7e-129 466.8 384 62.8
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 8.0e-127 458.0 386 61.4
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 3.7e-124 449.1 441 55.3
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 7.0e-123 444.9 331 69.8
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 3.8e-121 439.1 367 63.8
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.5e-117 427.2 333 66.4
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 2.0e-117 426.8 446 51.8
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 2.2e-116 423.3 379 59.4
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 1.2e-114 417.5 349 65.0
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 2.1e-111 406.8 430 50.7
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 8.0e-111 404.8 430 50.9
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 5.7e-109 398.7 281 73.3
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 9.1e-107 391.3 440 47.5
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 5.9e-106 388.7 275 73.1
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 1.6e-103 380.6 420 49.5
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 4.0e-102 375.9 331 61.3
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 3.5e-98 362.8 324 62.7
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.1e-95 353.6 249 71.1
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 4.9e-92 342.4 359 52.1
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.3e-89 334.3 479 45.7
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 8.3e-84 315.1 349 51.3
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.2e-82 311.2 305 57.7
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 2.9e-76 290.0 428 40.7
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 5.1e-73 279.3 449 37.0
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 1.4e-70 271.2 219 64.4
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 7.8e-66 255.4 180 70.0
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 1.1e-51 208.4 302 44.4
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 2.3e-49 200.7 421 33.7
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 2.1e-42 177.6 442 32.1
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.2e-35 153.7 103 72.8
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.0e-33 148.7 117 64.1
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 2.1e-26 124.4 405 26.4
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 4.3e-24 116.7 457 23.4
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 2.2e-23 114.4 80 71.2
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 4.8e-23 113.2 377 30.0
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 5.3e-22 109.8 81 65.4
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 5.3e-22 109.8 81 64.2
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 2.0e-21 107.8 82 65.9
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-20 103.6 431 24.6
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.0e-16 91.3 76 57.9
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 4.1e-14 83.6 71 59.2
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 2.1e-10 71.2 75 48.0
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 5.2e-09 66.6 75 45.3
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 2.8e-07 60.8 56 53.6
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 2.8e-07 60.8 65 55.4
SEGI_04453 Sequoiadendron giganteum HOM05D006261 ORTHO05D386652 9.1e-06 55.8 42 64.3


User provided reference genes

Program Settings