Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0000070 Simmondsia chinensis HOM05D003475 ORTHO05D004155 1.5e-112 409.5 194 100.0
Dinv42129 Davidia involucrata HOM05D003475 ORTHO05D004155 1.3e-79 300.1 190 73.2
Lj9A359T75 Lonicera japonica HOM05D003475 ORTHO05D004155 5.3e-78 294.7 186 73.1
CSS0021204 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 9.1e-78 293.9 191 71.2
Actinidia27942 Actinidia chinensis HOM05D003475 ORTHO05D004155 1.2e-77 293.5 185 73.0
CSS0002070 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 1.2e-77 293.5 191 70.7
Solyc10g050840.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 1.3e-76 290.0 184 71.7
Sopen10g022400 Solanum pennellii HOM05D003475 ORTHO05D004155 1.3e-76 290.0 184 71.7
Hma1.2p1_1543F.1_g289760 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 9.4e-75 283.9 186 71.0
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 1.6e-74 283.1 184 69.6
Ca_05516_v3 Cicer arietinum L. HOM05D003475 ORTHO05D004155 4.7e-74 281.6 188 70.2
Lj6g0027326 Lotus japonicus HOM05D003475 ORTHO05D004155 1.0e-73 280.4 186 71.0
TPR.G16593 Trifolium pratense HOM05D003475 ORTHO05D004155 1.0e-73 280.4 186 71.0
vmacro19485 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 1.0e-73 280.4 190 67.9
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 1.8e-73 279.6 186 68.8
Glyma.08G315400 Glycine max HOM05D003475 ORTHO05D004155 2.3e-73 279.3 188 70.2
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 4.0e-73 278.5 186 68.8
Peaxi162Scf00003g01723 Petunia axillaris HOM05D003475 ORTHO05D004155 5.2e-73 278.1 186 70.4
Phvul.006G042600 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 5.2e-73 278.1 188 70.2
GSVIVG01009565001 Vitis vinifera HOM05D003475 ORTHO05D004155 5.2e-73 278.1 191 69.1
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 8.8e-73 277.3 191 68.1
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 8.8e-73 277.3 191 68.1
Eucgr.F00028 Eucalyptus grandis HOM05D003475 ORTHO05D004155 8.8e-73 277.3 186 71.0
QL02p006064 Quercus lobata HOM05D003475 ORTHO05D004155 8.8e-73 277.3 188 69.7
Peaxi162Scf00929g00519 Petunia axillaris HOM05D003475 ORTHO05D004155 1.1e-72 276.9 188 68.1
VMungo0540G2323 Vigna mungo HOM05D003475 ORTHO05D004155 1.1e-72 276.9 186 70.4
Eucgr.F00027 Eucalyptus grandis HOM05D003475 ORTHO05D004155 1.5e-72 276.6 184 71.2
Eucgr.F00026 Eucalyptus grandis HOM05D003475 ORTHO05D004155 2.0e-72 276.2 186 69.4
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 2.6e-72 275.8 188 67.6
MSTRG.25109 Avicennia marina HOM05D003475 ORTHO05D004155 3.3e-72 275.4 192 68.2
Nitab4.5_0004930g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 3.3e-72 275.4 185 67.0
Eucgr.L02208 Eucalyptus grandis HOM05D003475 ORTHO05D004155 4.4e-72 275.0 186 68.8
Manes.18G034500 Manihot esculenta HOM05D003475 ORTHO05D004155 4.4e-72 275.0 191 68.1
Medtr3g051310 Medicago truncatula HOM05D003475 ORTHO05D004155 4.4e-72 275.0 186 69.9
RcHm_v2.0_Chr6g0307051 Rosa chinensis HOM05D003475 ORTHO05D004155 5.7e-72 274.6 188 68.6
TWI56G1470 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 7.5e-72 274.2 188 67.6
FvH4_2g34950 Fragaria vesca HOM05D003475 ORTHO05D004155 9.7e-72 273.9 188 68.6
Potri.002G128700 Populus trichocarpa HOM05D003475 ORTHO05D004155 9.7e-72 273.9 191 68.1
TWI56G0590 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 1.3e-71 273.5 188 67.0
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.7e-71 273.1 188 68.1
PGR083G1228 Punica granatum HOM05D003475 ORTHO05D004155 2.2e-71 272.7 186 68.3
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 3.7e-71 271.9 186 68.8
DCAR_003620 Daucus carota HOM05D003475 ORTHO05D004155 3.7e-71 271.9 190 67.9
MD15G1087800 Malus domestica HOM05D003475 ORTHO05D004155 3.7e-71 271.9 188 67.0
FAN27G1383 Fragaria x ananassa HOM05D003475 ORTHO05D004155 4.8e-71 271.6 188 68.1
GSVIVG01009564001 Vitis vinifera HOM05D003475 ORTHO05D004155 6.3e-71 271.2 191 67.5
FAN15G0079 Fragaria x ananassa HOM05D003475 ORTHO05D004155 8.2e-71 270.8 188 68.1
FAN20G0705 Fragaria x ananassa HOM05D003475 ORTHO05D004155 8.2e-71 270.8 188 68.1
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 1.1e-70 270.4 188 67.0
PSO675G3178 Papaver somniferum HOM05D003475 ORTHO05D004155 1.4e-70 270.0 192 66.7
Prupe.1G441500 Prunus persica HOM05D003475 ORTHO05D004155 1.4e-70 270.0 188 66.5
SalBow7G2172 Salvia bowleyana HOM05D003475 ORTHO05D004155 1.4e-70 270.0 187 68.4
Lj4C50T5 Lonicera japonica HOM05D003475 ORTHO05D004155 1.8e-70 269.6 188 67.0
PSO541G5638 Papaver somniferum HOM05D003475 ORTHO05D004155 1.8e-70 269.6 190 67.9
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 1.8e-70 269.6 190 67.9
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 2.4e-70 269.2 186 67.7
Lalb_Chr18g0049301 Lupinus albus HOM05D003475 ORTHO05D004155 3.1e-70 268.9 188 67.6
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 4.1e-70 268.5 186 67.7
Phvul.006G042700 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 5.3e-70 268.1 184 69.0
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 7.0e-70 267.7 187 65.8
MD08G1107200 Malus domestica HOM05D003475 ORTHO05D004155 7.0e-70 267.7 188 66.0
Psat5g180320 Pisum sativum HOM05D003475 ORTHO05D004155 7.0e-70 267.7 188 66.5
Ah.11g043410 Amaranthus hybridus HOM05D003475 ORTHO05D004155 9.1e-70 267.3 187 66.8
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 9.1e-70 267.3 191 64.9
Cpa.g.c26337.1 Carica papaya HOM05D003475 ORTHO05D004155 9.1e-70 267.3 191 66.0
Cfa018505 Carpinus fangiana HOM05D003475 ORTHO05D004155 9.1e-70 267.3 184 67.4
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 9.1e-70 267.3 187 65.2
Ciclev10003676m.g Citrus clementina HOM05D003475 ORTHO05D004155 1.2e-69 266.9 191 66.0
MBI02_g21206_MAGBIO Magnolia biondii HOM05D003475 ORTHO05D004155 1.6e-69 266.5 192 64.1
TAR381G1600 Trochodendron aralioides HOM05D003475 ORTHO05D004155 1.6e-69 266.5 190 67.9
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 2.0e-69 266.2 191 64.9
CANSAT25G2609 Cannabis sativa HOM05D003475 ORTHO05D004155 2.7e-69 265.8 186 69.4
SGA_v2.0_scaffold217G42435 Striga asiatica HOM05D003475 ORTHO05D004155 3.5e-69 265.4 188 66.0
Thecc.08G013900 Theobroma cacao HOM05D003475 ORTHO05D004155 3.5e-69 265.4 190 66.3
Haze_17571 Corylus avellana HOM05D003475 ORTHO05D004155 4.5e-69 265.0 192 64.6
Hma1.2p1_0260F.1_g104710 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 5.9e-69 264.6 186 66.7
VMungo0540G0248 Vigna mungo HOM05D003475 ORTHO05D004155 5.9e-69 264.6 184 68.5
Zm00001eb373080 Zea mays HOM05D003475 ORTHO05D004155 1.0e-68 263.8 189 63.5
ECA248G1217 Erigeron canadensis HOM05D003475 ORTHO05D004155 1.3e-68 263.5 188 66.0
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 2.9e-68 262.3 191 64.9
CAN.G57.16 Capsicum annuum HOM05D003475 ORTHO05D004155 3.8e-68 261.9 221 57.9
THA.LOC104821889 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 5.0e-68 261.5 186 64.0
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 6.5e-68 261.2 188 65.4
Glyma.18G098400 Glycine max HOM05D003475 ORTHO05D004155 6.5e-68 261.2 184 66.8
Sed0005929 Sechium edule HOM05D003475 ORTHO05D004155 6.5e-68 261.2 191 63.9
FvH4_2g34941 Fragaria vesca HOM05D003475 ORTHO05D004155 8.5e-68 260.8 186 66.1
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 8.5e-68 260.8 186 65.1
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 1.1e-67 260.4 184 64.7
HanXRQChr11g0349621 Helianthus annuus HOM05D003475 ORTHO05D004155 1.1e-67 260.4 188 62.8
MELO3C016731.2 Cucumis melo HOM05D003475 ORTHO05D004155 1.5e-67 260.0 186 65.6
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 1.5e-67 260.0 186 65.1
Gohir.D06G014300 Gossypium hirsutum HOM05D003475 ORTHO05D004155 1.5e-67 260.0 188 66.5
Gorai.010G016900 Gossypium raimondii HOM05D003475 ORTHO05D004155 1.5e-67 260.0 188 66.5
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 1.9e-67 259.6 191 64.4
Gohir.A06G016100 Gossypium hirsutum HOM05D003475 ORTHO05D004155 1.9e-67 259.6 186 67.2
Os06g0215300 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 2.5e-67 259.2 184 64.1
FAN27G2115 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.2e-67 258.8 189 64.6
Duzib116G0360 Durio zibethinus HOM05D003475 ORTHO05D004155 4.2e-67 258.5 191 63.4
Prupe.1G441400 Prunus persica HOM05D003475 ORTHO05D004155 4.2e-67 258.5 184 65.8
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 5.5e-67 258.1 186 65.6
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 5.5e-67 258.1 186 67.2
CARHR216560 Cardamine hirsuta HOM05D003475 ORTHO05D004155 1.2e-66 256.9 186 65.6
AL7G45140 Arabidopsis lyrata HOM05D003475 ORTHO05D004155 2.1e-66 256.1 186 65.1
Zm00001eb373040 Zea mays HOM05D003475 ORTHO05D004155 2.1e-66 256.1 190 60.5
Cc10_g03890 Coffea canephora HOM05D003475 ORTHO05D004155 2.7e-66 255.8 188 64.9
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 2.7e-66 255.8 190 63.7
Carub.0007s3188 Capsella rubella HOM05D003475 ORTHO05D004155 3.6e-66 255.4 186 65.1
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 3.6e-66 255.4 188 62.2
A08p00170 Brassica napus HOM05D003475 ORTHO05D004155 4.7e-66 255.0 186 64.5
BraA08t32073Z Brassica rapa HOM05D003475 ORTHO05D004155 4.7e-66 255.0 186 64.5
HPP92_004258 Vanilla planifolia HOM05D003475 ORTHO05D004155 4.7e-66 255.0 189 63.0
C03p93340 Brassica napus HOM05D003475 ORTHO05D004155 8.0e-66 254.2 186 64.5
BolC3t21632H Brassica oleracea HOM05D003475 ORTHO05D004155 8.0e-66 254.2 186 64.5
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 1.4e-65 253.4 185 63.2
Sed0014453 Sechium edule HOM05D003475 ORTHO05D004155 2.3e-65 252.7 185 64.9
Thhalv10003712m.g Eutrema salsugineum HOM05D003475 ORTHO05D004155 4.0e-65 251.9 186 63.4
CsaV3_4G034070 Cucumis sativus L. HOM05D003475 ORTHO05D004155 6.8e-65 251.1 187 63.1
Sp7g05960 Schrenkiella parvula HOM05D003475 ORTHO05D004155 6.8e-65 251.1 186 64.0
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 1.5e-64 250.0 185 63.2
SHI08311 Sapria himalayana HOM05D003475 ORTHO05D004155 9.8e-64 247.3 188 61.7
CAN.G1288.14 Capsicum annuum HOM05D003475 ORTHO05D004155 3.7e-63 245.4 184 63.6
AUR62040061 Chenopodium quinoa HOM05D003475 ORTHO05D004155 4.8e-63 245.0 186 64.0
FAN20G3001 Fragaria x ananassa HOM05D003475 ORTHO05D004155 4.8e-63 245.0 217 56.7
Rhsim06G0046300 Rhododendron simsii HOM05D003475 ORTHO05D004155 6.3e-63 244.6 215 58.1
Os06g0215400 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 2.4e-62 242.7 190 58.4
AUR62022463 Chenopodium quinoa HOM05D003475 ORTHO05D004155 1.2e-61 240.4 186 63.4
FAN15G1851 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.5e-61 238.8 208 57.7
THA.LOC104823807 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 7.7e-61 237.7 186 60.8
EL10Ac1g01808 Beta vulgaris HOM05D003475 ORTHO05D004155 1.0e-60 237.3 187 61.0
Hund26615 Selenicereus undatus HOM05D003475 ORTHO05D004155 2.2e-60 236.1 186 61.8
Aa31LG9G17910 Aethionema arabicum HOM05D003475 ORTHO05D004155 2.9e-60 235.7 226 52.7
Eucgr.F00025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 1.9e-59 233.0 148 74.3
Eucgr.L03025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 4.2e-59 231.9 183 62.3
Mapoly0002s0297 Marchantia polymorpha HOM05D003475 ORTHO05D004155 4.2e-59 231.9 192 57.8
Nitab4.5_0003649g0040 Nicotiana tabacum HOM05D003475 ORTHO05D004155 5.5e-59 231.5 186 60.2
arahy.Tifrunner.gnm1.ann1.HN34MD Arachis hypogaea HOM05D003475 ORTHO05D004155 2.7e-58 229.2 186 60.8
Nitab4.5_0002673g0070 Nicotiana tabacum HOM05D003475 ORTHO05D004155 5.7e-56 221.5 192 61.5
SMO361G0429 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 2.2e-55 219.5 187 59.4
Pp3c1_10400 Physcomitrium patens HOM05D003475 ORTHO05D004155 1.4e-54 216.9 185 56.2
ECA233G1971 Erigeron canadensis HOM05D003475 ORTHO05D004155 5.4e-54 214.9 188 54.8
Nitab4.5_0000876g0160 Nicotiana tabacum HOM05D003475 ORTHO05D004155 5.4e-54 214.9 196 57.7
Sabra02G0100800 Salix brachista HOM05D003475 ORTHO05D004155 2.3e-52 209.5 146 67.1
Nn5g30184 Nelumbo nucifera HOM05D003475 ORTHO05D004155 2.5e-51 206.1 147 63.3
Aqoxy6G01418 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 5.2e-49 198.4 145 64.1
vmacro21559 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 5.7e-48 194.9 207 50.7
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 1.7e-47 193.4 214 48.1
arahy.Tifrunner.gnm1.ann1.DEGU9R Arachis hypogaea HOM05D003475 ORTHO05D004155 7.0e-46 188.0 186 53.2
PRCOL_00005577 Prasinoderma coloniale HOM05D003475 ORTHO05D004155 4.7e-42 175.3 153 54.2
HPP92_004236 Vanilla planifolia HOM05D003475 ORTHO05D004155 4.7e-42 175.3 110 74.5
Cre10.g423300 Chlamydomonas reinhardtii HOM05D003475 ORTHO05D004155 1.9e-38 163.3 176 49.4
ATR0097G016 Amborella trichopoda HOM05D003475 ORTHO05D004155 1.9e-35 153.3 186 46.8
Nitab4.5_0028870g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 9.5e-35 151.0 109 61.5
Zm00001eb260330 Zea mays HOM05D003475 ORTHO05D004155 2.8e-34 149.4 118 55.9
SEGI_16824 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 1.0e-28 131.0 117 53.8
Nitab4.5_0003438g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 7.3e-27 124.8 71 78.9
SEGI_00299 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 1.9e-19 100.1 77 59.7
MD08G1107100 Malus domestica HOM05D003475 ORTHO05D004155 1.4e-14 84.0 79 46.8
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 3.2e-14 82.8 79 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 2.8e-10 69.7 159 27.7
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 4.8e-10 68.9 159 27.7
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 1.5e-08 63.9 95 34.7
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 1.5e-08 63.9 95 34.7
A01p23180 Brassica napus HOM05D003117 ORTHO05D003612 1.5e-08 63.9 95 34.7
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 1.5e-08 63.9 95 34.7
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 1.5e-08 63.9 95 34.7
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 1.5e-08 63.9 95 34.7
MD08G1107000 Malus domestica HOM05D003475 ORTHO05D004155 2.0e-08 63.5 40 75.0
TWI09G1508 Tripterygium wilfordii HOM05D003117 ORTHO05D003612 2.0e-08 63.5 93 34.4
Sabra08G0122200 Salix brachista HOM05D003117 ORTHO05D003612 4.5e-08 62.4 111 28.8
Mapoly0175s0001 Marchantia polymorpha HOM05D003475 ORTHO05D026663 7.6e-08 61.6 157 28.7
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 3.8e-07 59.3 95 31.6
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 4.9e-07 58.9 100 30.0
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 1.9e-06 57.0 92 35.9
C09p11360 Brassica napus HOM05D001549 ORTHO05D003098 7.1e-06 55.1 102 31.4


User provided reference genes

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