Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0010180 Simmondsia chinensis HOM05D005799 ORTHO05D007150 0.0e+00 1122.8 567 100.0
AUR62019903 Chenopodium quinoa HOM05D005799 ORTHO05D007150 1.1e-213 746.9 580 71.9
AUR62007039 Chenopodium quinoa HOM05D005799 ORTHO05D007150 5.7e-213 744.6 578 71.1
EL10Ac5g12455 Beta vulgaris HOM05D005799 ORTHO05D007150 1.4e-206 723.4 592 68.1
Ah.07g197850 Amaranthus hybridus HOM05D005799 ORTHO05D007150 2.8e-204 715.7 585 68.5
TAR375G0991 Trochodendron aralioides HOM05D005799 ORTHO05D007150 3.7e-204 715.3 592 67.7
Nn3g18897 Nelumbo nucifera HOM05D005799 ORTHO05D007150 2.9e-201 705.7 593 67.3
CSS0005333 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 5.5e-200 701.4 595 66.6
Eucgr.D01689 Eucalyptus grandis HOM05D005799 ORTHO05D007150 1.1e-195 687.2 588 64.3
VMungo0331G1577 Vigna mungo HOM05D005799 ORTHO05D007150 5.3e-195 684.9 586 64.5
Phvul.010G102500 Phaseolus vulgaris HOM05D005799 ORTHO05D007150 7.0e-195 684.5 585 63.6
Dinv12007 Davidia involucrata HOM05D005799 ORTHO05D007150 5.9e-194 681.4 593 64.6
CSS0012502 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 1.3e-193 680.2 595 64.9
Glyma.16G033100 Glycine max HOM05D005799 ORTHO05D007150 4.2e-192 675.2 583 63.8
Nitab4.5_0000151g0390 Nicotiana tabacum HOM05D005799 ORTHO05D007150 7.2e-192 674.5 576 64.8
Sopen08g020700 Solanum pennellii HOM05D005799 ORTHO05D007150 2.7e-191 672.5 584 64.6
Manes.02G004000 Manihot esculenta HOM05D005799 ORTHO05D007150 8.0e-191 671.0 578 65.1
TWI60G1445 Tripterygium wilfordii HOM05D005799 ORTHO05D007150 1.4e-190 670.2 576 64.9
Solyc08g066730.3 Solanum lycopersicum HOM05D005799 ORTHO05D007150 1.8e-190 669.8 589 64.2
PGSC0003DMG400004314 Solanum tuberosum HOM05D005799 ORTHO05D007150 3.0e-190 669.1 586 64.2
Glyma.07G067100 Glycine max HOM05D005799 ORTHO05D007150 5.7e-189 664.8 581 63.9
arahy.Tifrunner.gnm1.ann1.YTN4Z3 Arachis hypogaea HOM05D005799 ORTHO05D007150 9.8e-189 664.1 586 63.5
Rhsim02G0251100 Rhododendron simsii HOM05D005799 ORTHO05D007150 9.8e-189 664.1 580 66.2
Nitab4.5_0000837g0110 Nicotiana tabacum HOM05D005799 ORTHO05D007150 1.4e-187 660.2 583 64.3
ClCG10G000860 Citrullus lanatus HOM05D005799 ORTHO05D007150 2.4e-187 659.4 603 62.0
Lalb_Chr04g0259181 Lupinus albus HOM05D005799 ORTHO05D007150 9.1e-187 657.5 585 62.6
PSO063G0471 Papaver somniferum HOM05D005799 ORTHO05D007150 1.6e-186 656.8 583 62.8
Cc08_g16640 Coffea canephora HOM05D005799 ORTHO05D007150 2.0e-186 656.4 579 64.9
PGR031G2117 Punica granatum HOM05D005799 ORTHO05D007150 2.7e-186 656.0 588 64.3
CsaV3_3G000940 Cucumis sativus L. HOM05D005799 ORTHO05D007150 1.0e-185 654.1 606 62.0
Lalb_Chr10g0096751 Lupinus albus HOM05D005799 ORTHO05D007150 8.6e-185 651.0 584 62.3
CANSAT21G1656 Cannabis sativa HOM05D005799 ORTHO05D007150 7.2e-184 647.9 581 62.0
PSO782G0762 Papaver somniferum HOM05D005799 ORTHO05D007150 1.2e-183 647.1 585 61.7
MELO3C013781.2 Cucumis melo HOM05D005799 ORTHO05D007150 2.8e-183 646.0 591 62.8
vmacro11512 Vaccinium macrocarpon HOM05D005799 ORTHO05D007150 1.0e-182 644.0 587 63.4
Ca_17312_v3 Cicer arietinum L. HOM05D005799 ORTHO05D007150 1.4e-182 643.7 584 61.8
MD06G1116900 Malus domestica HOM05D005799 ORTHO05D007150 1.4e-182 643.7 615 61.3
CAN.G335.7 Capsicum annuum HOM05D005799 ORTHO05D007150 8.9e-182 641.0 575 63.3
Sabra01G0061800 Salix brachista HOM05D005799 ORTHO05D007150 4.4e-181 638.6 584 62.7
Lj8C201G21 Lonicera japonica HOM05D005799 ORTHO05D007150 5.7e-181 638.3 586 61.8
DCAR_006533 Daucus carota HOM05D005799 ORTHO05D007150 2.8e-180 636.0 577 62.6
Potri.001G085200 Populus trichocarpa HOM05D005799 ORTHO05D007150 4.9e-180 635.2 576 62.2
Psat7g010960 Pisum sativum HOM05D005799 ORTHO05D007150 6.3e-180 634.8 572 61.9
CDE04G1382 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 1.3e-177 627.1 567 62.1
RhsimUnG0077100 Rhododendron simsii HOM05D005799 ORTHO05D007150 1.3e-177 627.1 643 58.9
GSVIVG01019635001 Vitis vinifera HOM05D005799 ORTHO05D007150 3.9e-177 625.5 580 60.9
CiPaw.12G078600 Carya illinoinensis HOM05D005799 ORTHO05D007150 6.6e-177 624.8 568 62.1
Oeu010742.3 Olea europaea HOM05D005799 ORTHO05D007150 6.6e-177 624.8 576 62.3
TPR.G32682 Trifolium pratense HOM05D005799 ORTHO05D007150 1.1e-176 624.0 583 60.4
Lj3g0012917 Lotus japonicus HOM05D005799 ORTHO05D007150 2.1e-175 619.8 583 59.0
Sed0010941 Sechium edule HOM05D005799 ORTHO05D007150 2.1e-175 619.8 599 59.1
MBI17_g40130_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 2.3e-174 616.3 570 61.6
Cfa011938 Carpinus fangiana HOM05D005799 ORTHO05D007150 5.2e-174 615.1 568 61.3
Medtr8g104280 Medicago truncatula HOM05D005799 ORTHO05D007150 2.2e-172 609.8 568 59.3
Prupe.5G128200 Prunus persica HOM05D005799 ORTHO05D007150 2.9e-172 609.4 611 58.3
Sed0014517 Sechium edule HOM05D005799 ORTHO05D007150 3.7e-172 609.0 561 61.1
MSTRG.12196 Avicennia marina HOM05D005799 ORTHO05D007150 5.4e-171 605.1 584 60.3
HPP92_007392 Vanilla planifolia HOM05D005799 ORTHO05D007150 2.0e-170 603.2 575 61.2
MD14G1124400 Malus domestica HOM05D005799 ORTHO05D007150 6.0e-170 601.7 605 58.2
Lsat_1_v5_gn_3_13660 Lactuca sativa HOM05D005799 ORTHO05D007150 3.9e-169 599.0 581 59.9
Haze_09149 Corylus avellana HOM05D005799 ORTHO05D007150 8.6e-169 597.8 566 61.0
arahy.Tifrunner.gnm1.ann1.3PG13R Arachis hypogaea HOM05D005799 ORTHO05D007150 2.5e-168 596.3 582 59.1
Hma1.2p1_0440F.1_g153730 Hydrangea macrophylla HOM05D005799 ORTHO05D007150 3.3e-168 595.9 453 69.1
QL02p029127 Quercus lobata HOM05D005799 ORTHO05D007150 8.9e-166 587.8 581 59.7
SGA_v2.0_scaffold104G30268 Striga asiatica HOM05D005799 ORTHO05D007150 8.9e-166 587.8 564 59.4
COL.COLO4_10780 Corchorus olitorius HOM05D005799 ORTHO05D007150 1.5e-165 587.0 566 58.5
Migut.I01141 Erythranthe guttata HOM05D005799 ORTHO05D007150 2.6e-165 586.3 574 59.2
Os02g0672600 Oryza sativa ssp. japonica HOM05D005799 ORTHO05D007150 6.0e-162 575.1 589 56.9
Gorai.008G257500 Gossypium raimondii HOM05D005799 ORTHO05D007150 1.7e-161 573.5 566 58.0
Thecc.03G222800 Theobroma cacao HOM05D005799 ORTHO05D007150 2.3e-161 573.2 562 57.7
Gohir.D12G240500 Gossypium hirsutum HOM05D005799 ORTHO05D007150 3.0e-161 572.8 566 58.0
Duzib205G1547 Durio zibethinus HOM05D005799 ORTHO05D007150 5.1e-161 572.0 557 58.0
Gohir.A12G239300 Gossypium hirsutum HOM05D005799 ORTHO05D007150 8.6e-161 571.2 573 57.2
ATR0810G200 Amborella trichopoda HOM05D005799 ORTHO05D007150 1.1e-160 570.9 572 59.3
Atru.chr9.1907 Acer truncatum HOM05D005799 ORTHO05D007150 1.9e-160 570.1 566 58.0
FvH4_5g11050 Fragaria vesca HOM05D005799 ORTHO05D007150 1.1e-158 564.3 579 56.0
Ciclev10019070m.g Citrus clementina HOM05D005799 ORTHO05D007150 2.0e-157 560.1 571 57.4
Peaxi162Scf00161g00018 Petunia axillaris HOM05D005799 ORTHO05D007150 2.0e-157 560.1 582 57.6
HanXRQChr17g0534781 Helianthus annuus HOM05D005799 ORTHO05D007150 2.6e-157 559.7 582 56.9
RcHm_v2.0_Chr7g0186751 Rosa chinensis HOM05D005799 ORTHO05D007150 2.4e-155 553.1 582 56.2
ECA246G3622 Erigeron canadensis HOM05D005799 ORTHO05D007150 1.0e-153 547.7 571 56.9
Zm00001eb250310 Zea mays HOM05D005799 ORTHO05D007150 3.0e-153 546.2 589 54.7
FAN08G2876 Fragaria x ananassa HOM05D005799 ORTHO05D007150 6.6e-153 545.0 597 54.4
THA.LOC104806452 Tarenaya hassleriana HOM05D005799 ORTHO05D007150 6.6e-153 545.0 570 55.8
Carub.0006s2954 Capsella rubella HOM05D005799 ORTHO05D007150 1.1e-152 544.3 570 55.4
FAN18G1901 Fragaria x ananassa HOM05D005799 ORTHO05D007150 1.1e-152 544.3 608 52.8
AT4G10760 Arabidopsis thaliana HOM05D005799 ORTHO05D007150 2.1e-151 540.0 571 55.9
Sp6g06740 Schrenkiella parvula HOM05D005799 ORTHO05D007150 6.2e-151 538.5 580 55.7
Thhalv10028481m.g Eutrema salsugineum HOM05D005799 ORTHO05D007150 8.1e-151 538.1 574 55.9
Aa31LG9G11310 Aethionema arabicum HOM05D005799 ORTHO05D007150 4.0e-150 535.8 581 55.2
CARHR255850 Cardamine hirsuta HOM05D005799 ORTHO05D007150 5.2e-150 535.4 585 53.8
FAN13G1348 Fragaria x ananassa HOM05D005799 ORTHO05D007150 2.6e-149 533.1 617 51.7
AL6G44810 Arabidopsis lyrata HOM05D005799 ORTHO05D007150 1.3e-148 530.8 569 55.5
FAN04G0556 Fragaria x ananassa HOM05D005799 ORTHO05D007150 7.1e-147 525.0 628 50.6
BcaC04g21070 Brassica carinata HOM05D005799 ORTHO05D007150 1.2e-146 524.2 569 54.8
C09p36040 Brassica napus HOM05D005799 ORTHO05D007150 1.2e-146 524.2 569 54.8
BolC9t56443H Brassica oleracea HOM05D005799 ORTHO05D007150 1.2e-146 524.2 569 54.8
BcaB01g01512 Brassica carinata HOM05D005799 ORTHO05D007150 1.3e-145 520.8 576 54.5
SEGI_05717 Sequoiadendron giganteum HOM05D005799 ORTHO05D007150 1.3e-145 520.8 628 52.2
BraA09t38412Z Brassica rapa HOM05D005799 ORTHO05D007150 1.4e-142 510.8 577 53.0
A09p28470 Brassica napus HOM05D005799 ORTHO05D007150 2.4e-142 510.0 576 53.1
Cpa.g.sc1337.1 Carica papaya HOM05D005799 ORTHO05D007150 7.6e-141 505.0 478 59.0
SalBow6G6472 Salvia bowleyana HOM05D005799 ORTHO05D007150 2.7e-138 496.5 574 54.2
Mapoly0036s0127 Marchantia polymorpha HOM05D005799 ORTHO05D007150 1.8e-134 483.8 633 48.8
AagrBONN_evm.TU.Sc2ySwM_368.1158 Anthoceros agrestis HOM05D005799 ORTHO05D007150 1.2e-133 481.1 618 49.8
Medtr2g099870 Medicago truncatula HOM05D005799 ORTHO05D007150 1.4e-131 474.2 548 49.8
unitig_748.g7543 Utricularia gibba HOM05D005799 ORTHO05D007150 3.5e-130 469.5 571 51.8
Pp3c1_32590 Physcomitrium patens HOM05D005799 ORTHO05D007150 3.9e-121 439.5 462 55.6
CDE07G1281 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 5.1e-121 439.1 502 54.2
CAN.G1079.6 Capsicum annuum HOM05D005799 ORTHO05D007150 6.9e-118 428.7 311 69.5
SGA_v2.0_scaffold36G14279 Striga asiatica HOM05D005799 ORTHO05D007150 1.0e-116 424.9 430 57.0
TPR.G37954 Trifolium pratense HOM05D005799 ORTHO05D007150 7.4e-112 408.7 571 44.3
Actinidia22199 Actinidia chinensis HOM05D005799 ORTHO05D007150 5.0e-108 396.0 594 47.1
SHI06893 Sapria himalayana HOM05D005799 ORTHO05D007150 1.1e-104 384.8 464 53.7
SMO307G0078 Selaginella moellendorffii HOM05D005799 ORTHO05D007150 3.8e-100 369.8 245 72.7
Peaxi162Scf00039g00141 Petunia axillaris HOM05D005799 ORTHO05D007150 7.7e-93 345.5 392 52.3
CBR_g39884 Chara braunii HOM05D005799 ORTHO05D007150 3.8e-92 343.2 464 47.0
MBI12_g03921_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 1.1e-88 331.6 396 52.8
Actinidia04166 Actinidia chinensis HOM05D005799 ORTHO05D007150 2.5e-83 313.9 183 83.1
Cre06.g295600 Chlamydomonas reinhardtii HOM05D005799 ORTHO05D007150 4.7e-58 229.9 269 44.6
Haze_26998 Corylus avellana HOM05D005799 ORTHO05D007150 1.4e-54 218.4 228 47.8
Haze_26999 Corylus avellana HOM05D005799 ORTHO05D007150 1.9e-54 218.0 228 47.8
SHI06892 Sapria himalayana HOM05D005799 ORTHO05D007150 1.3e-47 195.3 99 88.9
RcHm_v2.0_Chr7g0186271 Rosa chinensis HOM05D005799 ORTHO05D007150 3.2e-46 190.7 190 55.8
Cc00_g18480 Coffea canephora HOM05D005799 ORTHO05D007150 4.0e-25 120.6 164 51.2
CAN.G1079.7 Capsicum annuum HOM05D005799 ORTHO05D007150 2.1e-21 108.2 98 60.2
Cfa003981 Carpinus fangiana HOM05D005799 ORTHO05D007150 3.3e-19 100.9 77 72.7
SGA_v2.0_scaffold36G14280 Striga asiatica HOM05D005799 ORTHO05D007150 2.8e-10 71.2 96 51.0
Medtr4g025470 Medicago truncatula HOM05D000092 ORTHO05D000042 3.2e-06 57.8 86 44.2


User provided reference genes

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