Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.0e-187 657.9 321 100.0
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 3.2e-96 355.9 276 67.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-85 320.9 302 57.3
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-85 320.1 297 57.9
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-84 317.4 280 60.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.1e-83 314.3 289 59.5
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.9e-82 308.5 278 59.4
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.2e-81 306.6 280 59.3
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.9e-81 306.2 280 59.3
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.5e-80 303.1 243 64.6
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.7e-79 299.7 277 59.9
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.7e-79 299.7 269 60.6
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 4.7e-79 298.9 278 60.1
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.0e-79 298.1 276 58.7
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.4e-78 297.4 268 60.8
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.8e-78 297.0 269 60.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 5.2e-78 295.4 287 56.8
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.5e-77 293.9 278 57.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 5.7e-77 292.0 280 57.5
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.7e-77 291.2 276 58.7
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.7e-76 290.4 283 56.5
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.2e-76 290.0 231 65.8
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.2e-76 290.0 231 65.8
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.2e-76 290.0 267 59.6
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.8e-76 289.7 265 58.5
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 3.7e-76 289.3 230 65.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.7e-76 289.3 265 59.2
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.3e-76 288.5 274 57.7
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 6.3e-76 288.5 280 57.5
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 6.3e-76 288.5 277 57.8
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.4e-75 287.3 267 59.2
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.4e-75 287.3 266 57.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.4e-75 286.6 224 66.1
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.3e-75 285.4 274 58.4
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.3e-75 285.4 264 59.8
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 7.0e-75 285.0 278 56.8
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 9.1e-75 284.6 267 56.2
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 9.1e-75 284.6 273 56.4
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 9.1e-75 284.6 273 56.0
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.2e-74 284.3 267 57.7
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.6e-74 283.9 268 57.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.0e-74 283.5 232 64.2
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.7e-74 283.1 268 57.5
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 5.9e-74 282.0 262 56.5
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 7.7e-74 281.6 279 55.9
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.0e-73 281.2 262 56.1
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.0e-73 281.2 274 55.8
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.7e-73 280.4 287 55.1
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 6.5e-73 278.5 277 57.0
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.5e-73 278.1 291 54.3
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.1e-72 277.7 275 56.4
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-72 276.2 262 59.5
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.2e-72 275.8 269 58.0
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 5.5e-72 275.4 279 55.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 9.4e-72 274.6 266 56.4
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.2e-71 274.2 233 61.4
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.2e-71 274.2 275 57.8
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.1e-71 273.5 269 56.5
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.1e-71 273.5 184 71.7
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 2.1e-71 273.5 267 55.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.6e-71 272.7 252 59.9
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 4.7e-71 272.3 195 68.2
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 6.1e-71 271.9 264 58.0
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.1e-71 271.9 267 55.4
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 8.0e-71 271.6 266 56.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.0e-70 271.2 265 55.5
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 1.4e-70 270.8 266 56.4
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.4e-70 270.8 271 56.5
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.8e-70 270.4 267 56.9
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.3e-70 270.0 251 58.2
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.3e-70 270.0 264 56.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 3.0e-70 269.6 205 66.8
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.0e-70 269.6 273 56.4
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 4.0e-70 269.2 269 58.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 4.0e-70 269.2 239 59.0
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.5e-69 267.3 181 72.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.0e-69 266.9 275 55.3
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.6e-69 266.5 279 54.5
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.6e-69 266.5 217 64.5
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.4e-69 265.8 177 73.4
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 5.7e-69 265.4 275 56.4
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 5.7e-69 265.4 275 56.4
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 5.7e-69 265.4 253 58.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 7.5e-69 265.0 313 48.6
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.7e-68 263.8 189 68.3
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.7e-68 263.8 178 72.5
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.7e-68 263.8 280 53.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.7e-68 263.8 268 55.6
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 3.7e-68 262.7 273 53.8
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 8.3e-68 261.5 178 69.7
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 8.3e-68 261.5 264 53.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.4e-67 260.8 182 70.9
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.8e-67 260.4 264 51.9
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.4e-67 260.0 268 54.5
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 2.4e-67 260.0 271 55.4
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.4e-67 260.0 184 69.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.1e-67 259.6 271 54.6
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.1e-67 259.6 268 55.2
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 5.4e-67 258.8 184 69.0
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.4e-67 258.8 273 54.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 9.1e-67 258.1 181 70.7
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.2e-66 257.7 274 53.3
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.7e-66 256.5 265 53.6
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 3.5e-66 256.1 273 54.2
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.5e-66 256.1 279 49.8
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 4.5e-66 255.8 268 56.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.9e-66 255.4 174 70.7
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 5.9e-66 255.4 271 50.9
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-65 254.2 262 55.0
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.3e-65 254.2 223 62.3
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.9e-65 253.1 174 70.1
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.5e-64 250.8 181 69.1
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 3.6e-63 246.1 192 64.6
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 3.6e-63 246.1 271 51.3
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 4.7e-63 245.7 220 60.9
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.8e-62 243.8 189 64.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.3e-62 243.4 269 53.5
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.0e-62 242.7 251 54.2
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.2e-62 242.3 190 61.6
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.8e-62 241.9 189 67.2
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.7e-60 237.3 164 71.3
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 8.3e-60 235.0 187 60.4
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.8e-59 233.8 250 54.0
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 9.2e-59 231.5 183 62.3
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.0e-58 230.3 157 69.4
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.7e-58 229.9 191 60.2
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 3.5e-58 229.6 187 64.7
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 4.5e-58 229.2 265 50.2
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.0e-57 228.0 355 42.3
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 5.0e-57 225.7 188 61.2
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 6.6e-57 225.3 264 46.6
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 8.6e-57 224.9 163 65.6
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 8.6e-57 224.9 188 61.7
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 8.6e-57 224.9 188 61.7
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.5e-56 224.2 189 61.4
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.3e-56 223.0 162 67.3
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 5.6e-56 222.2 184 61.4
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 7.3e-56 221.9 188 62.8
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 8.9e-54 214.9 178 61.8
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-51 207.6 214 55.1
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.4e-51 207.6 214 55.1
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.7e-49 200.7 138 72.5
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.0e-49 199.9 139 69.1
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.5e-48 197.6 255 47.5
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.5e-48 197.6 123 73.2
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.5e-48 194.9 122 76.2
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.8e-45 184.9 127 68.5
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.0e-41 174.9 199 52.8
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 3.9e-41 172.9 139 61.9
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.1e-38 163.3 167 47.3
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 8.9e-30 135.2 115 57.4
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.9e-28 129.4 207 37.2
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.3e-17 94.7 91 51.6
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 3.9e-17 93.2 69 66.7
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.6e-15 86.7 154 38.3
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.0e-14 83.2 154 32.5
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 7.6e-13 79.0 60 65.0
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.1e-11 75.1 84 58.3
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.6e-10 71.2 45 62.2


User provided reference genes

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