Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 4.4e-124 448.0 227 100.0
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 8.4e-83 310.8 188 83.0
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.8e-80 303.1 218 68.8
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.8e-80 303.1 218 68.8
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 5.1e-80 301.6 230 68.3
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 6.7e-80 301.2 190 78.9
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 6.7e-80 301.2 198 73.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.9e-79 299.7 230 69.1
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.9e-79 299.7 230 68.3
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 2.5e-79 299.3 192 76.0
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 5.6e-79 298.1 190 76.3
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 5.6e-79 298.1 211 69.2
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.6e-79 297.4 228 69.3
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.6e-79 297.4 228 69.3
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 9.6e-79 297.4 224 68.8
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.8e-78 295.8 190 74.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.8e-78 295.8 213 69.5
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 2.8e-78 295.8 190 74.2
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 4.8e-78 295.0 222 66.2
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.1e-77 293.9 227 67.8
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 1.1e-77 293.9 191 73.3
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.8e-77 293.1 199 73.4
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 3.1e-77 292.4 229 66.4
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 5.3e-77 291.6 232 64.7
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 5.3e-77 291.6 226 67.3
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 5.3e-77 291.6 198 70.2
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 6.9e-77 291.2 219 67.1
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 9.0e-77 290.8 219 68.0
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 9.0e-77 290.8 198 72.2
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 9.0e-77 290.8 204 69.6
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 9.0e-77 290.8 223 65.5
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.2e-76 290.4 219 65.8
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.2e-76 290.4 197 70.6
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.5e-76 290.0 212 68.9
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.5e-76 290.0 220 66.8
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 4.5e-76 288.5 214 66.4
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 5.8e-76 288.1 190 72.1
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 7.6e-76 287.7 217 68.2
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 7.6e-76 287.7 213 67.6
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.0e-75 287.3 192 72.9
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.7e-75 286.6 200 71.0
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.2e-75 286.2 189 74.6
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.9e-75 285.0 227 65.2
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 4.9e-75 285.0 227 66.1
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 4.9e-75 285.0 190 73.7
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.5e-75 284.6 227 65.6
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 6.5e-75 284.6 185 77.3
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 8.4e-75 284.3 200 70.0
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.4e-74 283.5 196 71.9
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.9e-74 283.1 189 72.0
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.9e-74 283.1 220 67.3
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.5e-74 282.7 197 70.6
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 3.2e-74 282.3 195 71.8
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 4.2e-74 282.0 191 73.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 5.5e-74 281.6 222 64.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 7.1e-74 281.2 190 74.2
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 9.3e-74 280.8 220 65.5
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 9.3e-74 280.8 198 70.2
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.2e-73 280.4 188 72.9
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.2e-73 280.4 230 62.6
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 2.1e-73 279.6 199 69.8
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 2.7e-73 279.3 198 70.2
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.5e-73 278.9 196 71.9
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 4.6e-73 278.5 184 73.9
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 4.6e-73 278.5 190 70.5
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 6.0e-73 278.1 190 70.0
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 7.9e-73 277.7 224 63.8
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 1.8e-72 276.6 184 73.4
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.3e-72 276.2 221 64.3
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 3.0e-72 275.8 192 68.8
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.9e-72 275.4 246 60.6
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 8.7e-72 274.2 227 63.0
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.5e-71 273.5 209 65.1
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.5e-71 273.5 209 66.0
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.9e-71 273.1 192 69.8
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 5.7e-71 271.6 230 61.7
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 5.7e-71 271.6 230 61.7
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 5.7e-71 271.6 273 54.9
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 7.4e-71 271.2 231 61.5
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 7.4e-71 271.2 233 59.2
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 1.4e-69 266.9 232 59.9
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 2.4e-69 266.2 174 75.3
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 9.0e-69 264.2 192 67.7
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.5e-68 263.5 241 57.3
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.3e-67 260.4 206 63.6
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.8e-67 258.8 239 58.6
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.5e-67 258.1 223 62.3
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 6.5e-67 258.1 219 60.3
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 8.4e-67 257.7 245 55.1
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.1e-66 257.3 183 68.3
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.1e-65 253.1 223 61.0
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 7.9e-65 251.1 222 58.1
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 7.9e-65 251.1 157 77.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-64 250.0 156 77.6
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.3e-64 249.6 201 63.2
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.9e-64 248.8 157 77.1
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 6.7e-64 248.1 170 70.6
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 8.7e-64 247.7 167 71.9
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.9e-63 246.5 159 76.1
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 3.3e-63 245.7 172 68.0
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 5.7e-63 245.0 157 75.8
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 2.4e-61 239.6 191 67.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 3.1e-61 239.2 157 75.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 9.0e-61 237.7 188 65.4
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-60 236.5 160 71.9
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.0e-60 236.5 191 58.6
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.3e-55 219.2 176 60.2
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 5.7e-55 218.4 177 61.6
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.3e-53 211.8 130 77.7
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 2.6e-52 209.5 176 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.4e-50 203.8 176 59.7
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.6e-49 200.3 121 78.5
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-47 194.1 158 64.6
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-43 179.5 158 60.8
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-43 179.1 161 60.2
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 8.5e-43 177.9 123 67.5
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-42 177.6 157 61.8
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-42 176.4 156 60.9
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 9.4e-42 174.5 162 59.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-41 174.1 173 56.1
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-41 174.1 157 59.9
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-40 169.1 156 59.0
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-39 167.2 160 56.9
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.5e-39 167.2 174 55.2
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.2e-36 157.5 95 81.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-36 155.2 142 59.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-35 154.1 159 56.0
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 8.5e-35 151.4 96 78.1
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 9.4e-34 147.9 96 80.2
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 9.4e-34 147.9 96 80.2
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.7e-33 145.6 123 63.4
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 8.0e-33 144.8 122 63.1
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-32 144.4 96 78.1
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-32 142.1 108 68.5
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-32 142.1 94 77.7
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-30 136.7 160 50.6
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-30 136.7 160 50.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-25 120.9 112 58.0
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-25 119.8 143 51.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 4.7e-25 119.0 151 51.7
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-22 110.9 162 42.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-19 100.1 70 72.9
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-18 94.7 89 58.4
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-16 90.1 99 50.5
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.0e-16 89.7 57 75.4
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 9.8e-15 84.7 56 67.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 3.7e-14 82.8 154 36.4
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.0e-12 77.0 49 75.5
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.0e-12 77.0 49 75.5
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.1e-10 71.2 132 36.4
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.6e-09 67.4 153 31.4
Duzib205G0541 Durio zibethinus HOM05D004703 ORTHO05D005801 9.8e-07 58.2 146 34.2


User provided reference genes

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