Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 0.0e+00 1097.4 555 100.0
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 7.7e-29 132.9 227 40.5
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 3.3e-24 117.5 159 42.1
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.3e-23 115.5 161 43.5
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 5.9e-21 106.7 148 44.6
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 6.5e-20 103.2 150 42.0
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 1.6e-18 98.6 384 28.4
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.6e-16 91.3 224 34.4
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 2.6e-16 91.3 224 34.4
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 1.7e-15 88.6 185 37.8
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 1.2e-13 82.4 194 34.5
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 2.6e-13 81.3 189 34.4
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 4.5e-13 80.5 223 33.2
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 5.9e-13 80.1 306 29.4
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 2.9e-12 77.8 160 37.5
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 5.0e-12 77.0 131 39.7
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 8.5e-12 76.3 125 40.8
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 8.5e-12 76.3 220 33.2
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 1.9e-11 75.1 220 32.7
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 2.5e-11 74.7 243 28.8
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 2.5e-11 74.7 185 35.1
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 2.5e-11 74.7 360 27.5
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 3.2e-11 74.3 221 30.8
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 3.2e-11 74.3 126 38.9
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 4.2e-11 73.9 185 35.1
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 7.2e-11 73.2 129 36.4
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 9.4e-11 72.8 166 36.1
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 9.4e-11 72.8 133 37.6
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 9.4e-11 72.8 253 31.2
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 1.2e-10 72.4 174 31.6
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 2.1e-10 71.6 253 27.7
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.1e-10 71.6 181 34.3
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 4.7e-10 70.5 139 36.7
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 4.7e-10 70.5 161 33.5
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 6.1e-10 70.1 224 30.8
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 1.8e-09 68.6 155 38.1
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 3.0e-09 67.8 224 31.2
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 3.0e-09 67.8 196 35.2
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 4.0e-09 67.4 348 27.0
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.0e-09 67.4 129 38.0
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 8.8e-09 66.2 347 25.4
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 1.2e-08 65.9 146 34.9
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 1.2e-08 65.9 173 31.8
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 2.0e-08 65.1 212 33.0
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 2.6e-08 64.7 127 37.0
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 4.4e-08 63.9 118 38.1
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 5.7e-08 63.5 154 36.4
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 5.7e-08 63.5 158 32.9
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 7.5e-08 63.2 211 29.9
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 7.5e-08 63.2 152 37.5
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 7.5e-08 63.2 142 35.9
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.3e-07 62.4 129 36.4
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 2.2e-07 61.6 157 33.1
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.2e-07 61.6 124 36.3
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 2.8e-07 61.2 240 31.2
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 3.7e-07 60.8 213 31.0
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 6.3e-07 60.1 195 30.3
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 6.3e-07 60.1 219 28.3
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 1.1e-06 59.3 129 31.8
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 1.4e-06 58.9 317 24.9
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 2.4e-06 58.2 122 36.9
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 5.3e-06 57.0 227 29.5
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 7.0e-06 56.6 130 36.2
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 7.0e-06 56.6 215 30.7
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 9.1e-06 56.2 122 36.1
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 9.1e-06 56.2 132 35.6


User provided reference genes

Program Settings