Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 2.7e-180 635.2 320 100.0
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 4.8e-124 448.4 252 86.5
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 6.2e-124 448.0 318 71.4
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 3.1e-123 445.7 319 72.1
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 4.0e-123 445.3 260 84.6
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 5.3e-123 444.9 277 79.1
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 6.9e-123 444.5 275 77.8
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 9.0e-123 444.1 272 79.8
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 9.0e-123 444.1 277 79.1
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 1.2e-122 443.7 282 77.0
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 7.6e-122 441.0 295 73.6
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.3e-121 440.3 306 72.9
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 2.2e-121 439.5 265 79.6
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 2.2e-121 439.5 275 78.9
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 2.9e-121 439.1 318 70.8
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 2.9e-121 439.1 311 72.3
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 6.4e-121 438.0 273 78.0
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 1.4e-120 436.8 272 77.2
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 2.4e-120 436.0 332 68.1
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 2.4e-120 436.0 260 81.2
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 3.2e-120 435.6 288 75.3
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 4.2e-120 435.3 314 71.3
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 7.1e-120 434.5 271 78.2
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.7e-119 432.6 305 71.1
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.7e-119 432.6 279 75.3
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 4.6e-119 431.8 292 74.0
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 4.6e-119 431.8 304 71.7
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 7.9e-119 431.0 309 68.9
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.9e-119 431.0 305 70.8
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 1.0e-118 430.6 305 70.8
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 1.8e-118 429.9 323 67.5
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 2.3e-118 429.5 262 81.3
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 2.3e-118 429.5 315 70.5
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 2.3e-118 429.5 304 71.7
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 3.0e-118 429.1 313 69.3
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.9e-118 428.7 312 69.6
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 3.9e-118 428.7 270 77.4
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 3.9e-118 428.7 324 68.5
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.5e-117 426.8 311 69.5
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 1.5e-117 426.8 317 68.5
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 1.9e-117 426.4 261 79.3
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 3.3e-117 425.6 271 76.8
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 9.6e-117 424.1 260 78.8
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 1.3e-116 423.7 270 76.3
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 4.8e-116 421.8 260 78.8
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 6.2e-116 421.4 285 74.0
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 1.1e-115 420.6 275 74.9
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 1.1e-115 420.6 270 74.8
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 1.8e-115 419.9 329 68.4
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 3.1e-115 419.1 256 79.3
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 4.0e-115 418.7 273 76.2
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 6.9e-115 417.9 258 78.3
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 1.5e-114 416.8 275 74.2
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 1.5e-114 416.8 317 66.6
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 2.0e-114 416.4 259 77.6
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 2.0e-114 416.4 275 74.2
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 2.6e-114 416.0 260 76.5
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 2.6e-114 416.0 321 67.6
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 3.4e-114 415.6 312 68.3
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 5.8e-114 414.8 313 68.4
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 7.6e-114 414.5 317 68.1
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 9.9e-114 414.1 275 73.5
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 9.9e-114 414.1 275 73.8
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 1.3e-113 413.7 264 76.5
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 3.8e-113 412.1 265 77.7
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 8.4e-113 411.0 320 66.6
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.1e-112 410.6 293 69.3
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 1.8e-110 403.3 267 73.8
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 2.3e-110 402.9 320 65.0
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 3.3e-109 399.1 247 77.7
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 4.8e-108 395.2 273 74.4
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 6.2e-108 394.8 322 64.3
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 6.9e-107 391.3 255 74.1
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 2.0e-106 389.8 324 63.3
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 3.0e-102 375.9 281 68.3
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 1.5e-101 373.6 275 69.5
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 2.1e-100 369.8 224 79.0
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 7.6e-98 361.3 229 78.2
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 1.9e-96 356.7 329 60.8
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 7.9e-95 351.3 273 66.7
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 1.5e-93 347.1 212 78.3
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 3.1e-91 339.3 201 81.6
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 6.9e-91 338.2 295 57.6
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 3.6e-87 325.9 223 73.1
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 3.9e-86 322.4 254 61.4
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.4e-83 313.9 259 56.8
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.4e-75 287.3 222 60.8
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 2.9e-73 279.6 225 59.6
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 9.7e-69 264.6 153 85.6
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.8e-68 263.1 287 53.3
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.8e-68 263.1 287 53.3
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 2.0e-66 256.9 171 74.3
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 2.7e-63 246.5 169 72.2
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 2.1e-55 220.3 133 77.4
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 6.3e-52 208.8 249 49.8
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 1.6e-50 204.1 308 40.3
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 1.4e-46 191.0 165 58.2
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 6.4e-44 182.2 270 42.2
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 5.0e-41 172.6 275 36.7
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 1.5e-40 171.0 110 76.4
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 8.3e-36 155.2 98 75.5
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.1e-30 138.3 75 82.7
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 1.9e-24 117.5 77 68.8
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.6e-23 114.4 282 31.2
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 2.8e-23 113.6 327 27.8
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 9.2e-19 98.6 119 50.4
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 2.7e-18 97.1 98 52.0
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 1.1e-16 91.7 84 51.2
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 2.7e-10 70.5 309 25.6
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.7e-10 70.5 286 26.2
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 6.0e-10 69.3 284 26.4
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 6.0e-10 69.3 274 26.3
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 7.8e-10 68.9 285 24.9
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 7.8e-10 68.9 291 25.1
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.0e-09 68.6 291 25.1
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.7e-09 67.8 330 26.4
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 3.0e-09 67.0 289 27.7
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.0e-09 67.0 274 25.2
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 3.9e-09 66.6 303 25.7
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 3.9e-09 66.6 293 27.0
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 5.1e-09 66.2 295 25.4
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 6.6e-09 65.9 269 23.0
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 8.7e-09 65.5 272 25.4
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 8.7e-09 65.5 292 26.0
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.5e-08 64.7 293 23.9
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.5e-08 64.7 293 25.3
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.9e-08 64.3 290 26.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.9e-08 64.3 290 26.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.9e-08 64.3 290 26.2
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.9e-08 64.3 290 26.2
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 1.9e-08 64.3 278 26.3
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.9e-08 64.3 295 24.7
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 2.5e-08 63.9 276 26.8
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 3.3e-08 63.5 325 24.0
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 3.3e-08 63.5 292 25.7
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 3.3e-08 63.5 272 24.3
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 5.6e-08 62.8 280 24.6
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 5.6e-08 62.8 280 24.6
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 5.6e-08 62.8 278 25.9
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 5.6e-08 62.8 334 24.9
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.3e-08 62.4 278 24.8
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 9.6e-08 62.0 276 24.3
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 9.6e-08 62.0 278 24.1
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.3e-07 61.6 284 26.8
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.3e-07 61.6 336 24.7
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.3e-07 61.6 274 24.5
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.3e-07 61.6 274 24.5
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.6e-07 61.2 361 23.5
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 2.1e-07 60.8 276 26.1
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 2.8e-07 60.5 289 25.6
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 3.6e-07 60.1 278 26.3
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 3.6e-07 60.1 278 24.8
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.6e-07 60.1 272 23.2
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 3.6e-07 60.1 340 24.7
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 3.6e-07 60.1 342 23.7
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 4.8e-07 59.7 283 26.5
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 4.8e-07 59.7 297 24.9
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 8.1e-07 58.9 289 25.3
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.1e-06 58.5 300 24.3
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.4e-06 58.2 290 23.4
Haze_08096 Corylus avellana HOM05D000342 ORTHO05D000217 1.8e-06 57.8 167 30.5
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.8e-06 57.8 301 24.3
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 2.4e-06 57.4 289 24.6
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.4e-06 57.4 276 26.4
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 2.4e-06 57.4 277 25.3
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.0e-06 56.6 272 25.7
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 5.3e-06 56.2 263 24.0
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 5.3e-06 56.2 277 25.3


User provided reference genes

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