Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 6.3e-70 267.7 176 100.0
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.4e-45 186.8 172 79.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.9e-45 186.4 167 71.3
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 5.4e-45 184.9 177 78.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.2e-44 183.7 173 67.1
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.6e-44 183.3 173 67.6
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 2.0e-44 183.0 176 65.3
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.7e-44 182.6 177 54.8
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.6e-44 181.8 177 78.0
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 4.6e-44 181.8 174 79.3
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 7.8e-44 181.0 173 64.2
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.8e-44 181.0 174 63.2
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.8e-44 181.0 174 63.2
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.8e-44 181.0 174 63.2
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.7e-43 179.9 171 78.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.7e-43 179.9 173 76.9
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.3e-43 179.5 174 78.7
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.0e-43 179.1 174 64.4
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.0e-43 179.1 173 66.5
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.6e-43 177.9 177 76.8
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-42 177.2 174 62.6
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.1e-42 177.2 174 74.7
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.5e-42 176.8 165 80.6
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.5e-42 176.8 165 80.6
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.9e-42 176.4 177 76.8
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.3e-42 175.3 165 80.6
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 5.6e-42 174.9 177 78.0
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 7.3e-42 174.5 177 76.8
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 7.3e-42 174.5 159 81.8
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.6e-41 173.3 173 65.3
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.1e-41 172.9 165 66.7
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 2.8e-41 172.6 158 72.2
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.6e-41 172.2 173 63.6
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 3.6e-41 172.2 178 77.0
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 3.6e-41 172.2 178 77.0
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 3.6e-41 172.2 173 75.7
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 4.7e-41 171.8 174 66.1
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 4.7e-41 171.8 171 74.3
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 6.2e-41 171.4 177 64.4
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.4e-40 170.2 166 68.7
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.4e-40 170.2 177 75.1
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.1e-40 169.1 175 63.4
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.1e-40 169.1 174 63.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.0e-40 168.7 175 60.6
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.2e-40 168.3 175 65.7
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 5.2e-40 168.3 167 63.5
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.2e-39 167.2 173 64.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.2e-39 167.2 160 72.5
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.5e-39 166.8 164 79.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.5e-39 166.8 174 77.0
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.0e-39 166.4 173 68.2
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.0e-39 166.4 174 74.7
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.0e-39 166.4 173 63.0
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 2.0e-39 166.4 176 64.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 4.4e-39 165.2 166 77.7
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 4.4e-39 165.2 166 77.7
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 7.5e-39 164.5 174 70.7
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 9.9e-39 164.1 168 64.3
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 9.9e-39 164.1 158 63.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.7e-38 163.3 175 71.4
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.9e-38 162.5 154 81.2
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.9e-38 162.5 163 68.1
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.7e-38 162.2 173 73.4
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 6.4e-38 161.4 164 74.4
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 6.4e-38 161.4 173 65.3
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 8.3e-38 161.0 173 73.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.1e-37 160.6 173 74.0
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.1e-37 160.6 173 74.0
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.9e-37 159.8 171 76.0
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.4e-37 159.5 172 62.2
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 4.1e-37 158.7 174 70.7
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 5.4e-37 158.3 164 76.2
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 7.1e-37 157.9 170 60.6
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 7.1e-37 157.9 173 62.4
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 9.2e-37 157.5 166 74.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.6e-36 156.8 173 61.3
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.1e-36 156.4 174 70.1
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.1e-36 156.4 166 73.5
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 3.5e-36 155.6 173 71.1
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 7.8e-36 154.5 170 70.6
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.7e-35 153.3 154 65.6
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.7e-35 153.3 174 59.8
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.7e-35 153.3 161 79.5
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.3e-35 152.9 173 72.3
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 2.3e-35 152.9 166 64.5
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 8.6e-35 151.0 173 61.3
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.9e-34 149.8 151 80.1
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.9e-34 149.8 145 76.6
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.5e-34 149.4 240 39.6
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.5e-34 149.4 173 52.0
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 164 62.8
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 173 61.3
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.8e-33 146.0 166 74.1
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 4.7e-33 145.2 177 68.4
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 8.1e-33 144.4 173 46.2
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 173 60.7
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.8e-32 143.3 167 49.1
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.4e-32 142.9 161 52.2
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.1e-32 142.5 168 48.8
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.1e-32 142.5 176 71.0
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 4.0e-32 142.1 176 71.0
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 5.2e-32 141.7 168 48.8
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 8.9e-32 141.0 173 60.1
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 8.9e-32 141.0 173 60.1
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 8.9e-32 141.0 173 60.1
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 3.4e-31 139.0 169 58.6
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.4e-31 138.7 174 47.7
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 5.8e-31 138.3 165 72.7
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 5.8e-31 138.3 171 69.6
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 5.8e-31 138.3 138 71.7
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 9.9e-31 137.5 157 49.0
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.9e-30 135.2 166 71.7
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 4.9e-30 135.2 166 61.4
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.9e-30 135.2 163 57.7
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 6.4e-30 134.8 167 70.7
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 165 70.3
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-29 134.0 157 69.4
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 1.1e-29 134.0 167 70.7
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 1.1e-29 134.0 167 70.7
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-29 133.7 167 70.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 1.9e-29 133.3 165 71.5
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.9e-29 133.3 165 55.8
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.2e-28 130.6 167 55.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.2e-28 130.6 167 55.1
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.7e-28 129.4 168 69.0
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.5e-28 129.0 170 70.6
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.3e-27 127.1 180 52.8
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.7e-27 126.7 157 54.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.7e-27 126.7 157 54.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.7e-27 126.7 157 54.8
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 6.6e-27 124.8 143 72.7
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 3.3e-26 122.5 129 67.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.3e-26 122.1 165 55.2
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 9.6e-26 120.9 162 49.4
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.8e-25 119.4 151 55.6
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-24 117.5 163 52.1
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.8e-24 116.7 146 56.8
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.3e-22 110.5 126 65.9
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 8.4e-22 107.8 101 75.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.2e-21 105.9 121 65.3
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.3e-19 99.8 152 54.6
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.9e-18 96.7 87 57.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 4.3e-18 95.5 101 69.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 7.3e-18 94.7 124 40.3
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.1e-17 93.2 129 55.8
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.1e-17 93.2 120 61.7
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.0e-15 86.7 84 51.2
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.8e-14 82.4 101 63.4
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 7.4e-10 68.2 46 67.4
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 6.2e-09 65.1 47 66.0


User provided reference genes

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