Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0008020 Simmondsia chinensis HOM05D007367 ORTHO05D008866 5.0e-91 337.8 175 100.0
Gohir.D12G204000 Gossypium hirsutum HOM05D007367 ORTHO05D008866 9.8e-47 190.7 164 58.5
GSVIVG01036886001 Vitis vinifera HOM05D007367 ORTHO05D008866 1.8e-45 186.4 160 59.4
Gohir.A12G201200 Gossypium hirsutum HOM05D007367 ORTHO05D008866 5.4e-45 184.9 164 57.3
Cc08_g05930 Coffea canephora HOM05D007367 ORTHO05D008866 7.0e-45 184.5 171 53.8
Thecc.03G320300 Theobroma cacao HOM05D007367 ORTHO05D008866 7.0e-45 184.5 160 60.0
Actinidia32792 Actinidia chinensis HOM05D007367 ORTHO05D008866 1.0e-43 180.6 159 59.7
Sp7g17960 Schrenkiella parvula HOM05D007367 ORTHO05D008866 1.0e-43 180.6 170 54.1
COL.COLO4_16748 Corchorus olitorius HOM05D007367 ORTHO05D008866 1.7e-43 179.9 161 55.3
Gorai.008G218800 Gossypium raimondii HOM05D007367 ORTHO05D008866 1.7e-43 179.9 153 59.5
Dinv37431 Davidia involucrata HOM05D007367 ORTHO05D008866 2.3e-43 179.5 167 57.5
EL10Ac8g19394 Beta vulgaris HOM05D007367 ORTHO05D008866 3.8e-43 178.7 159 56.0
Duzib068G0439 Durio zibethinus HOM05D007367 ORTHO05D008866 6.6e-43 177.9 157 60.5
THA.LOC104811080 Tarenaya hassleriana HOM05D007367 ORTHO05D008866 1.1e-42 177.2 170 56.5
Cfa012305 Carpinus fangiana HOM05D007367 ORTHO05D008866 7.2e-42 174.5 160 56.9
Prupe.5G013300 Prunus persica HOM05D007367 ORTHO05D008866 7.2e-42 174.5 160 55.0
Carub.0007s2188 Capsella rubella HOM05D007367 ORTHO05D008866 9.5e-42 174.1 170 52.9
CiPaw.11G074200 Carya illinoinensis HOM05D007367 ORTHO05D008866 1.6e-41 173.3 170 54.1
ClCG07G011120 Citrullus lanatus HOM05D007367 ORTHO05D008866 1.6e-41 173.3 170 52.9
SGA_v2.0_scaffold89G27372 Striga asiatica HOM05D007367 ORTHO05D008866 1.6e-41 173.3 172 53.5
CARHR226150 Cardamine hirsuta HOM05D007367 ORTHO05D008866 2.1e-41 172.9 170 52.4
Ciclev10012881m.g Citrus clementina HOM05D007367 ORTHO05D008866 2.1e-41 172.9 162 56.8
Nn1g01985 Nelumbo nucifera HOM05D007367 ORTHO05D008866 2.8e-41 172.6 159 56.0
MELO3C016218.2 Cucumis melo HOM05D007367 ORTHO05D008866 6.1e-41 171.4 170 52.4
Potri.004G235300 Populus trichocarpa HOM05D007367 ORTHO05D008866 8.0e-41 171.0 157 54.8
Manes.10G067900 Manihot esculenta HOM05D007367 ORTHO05D008866 1.8e-40 169.9 166 54.8
CANSAT01G1692 Cannabis sativa HOM05D007367 ORTHO05D008866 2.3e-40 169.5 171 55.0
MD03G1130300 Malus domestica HOM05D007367 ORTHO05D008866 4.0e-40 168.7 163 50.9
QL12p003620 Quercus lobata HOM05D007367 ORTHO05D008866 4.0e-40 168.7 160 53.1
QL93p0143_0020 Quercus lobata HOM05D007367 ORTHO05D008866 4.0e-40 168.7 160 53.1
AT4G19350 Arabidopsis thaliana HOM05D007367 ORTHO05D008866 6.8e-40 167.9 170 50.0
Migut.A00520 Erythranthe guttata HOM05D007367 ORTHO05D008866 6.8e-40 167.9 161 52.8
SalBow4G0967 Salvia bowleyana HOM05D007367 ORTHO05D008866 1.5e-39 166.8 160 53.8
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 2.6e-39 166.0 161 53.4
AL7G34810 Arabidopsis lyrata HOM05D007367 ORTHO05D008866 4.4e-39 165.2 170 50.6
Sed0007825 Sechium edule HOM05D007367 ORTHO05D008866 4.4e-39 165.2 165 52.1
Solyc12g096170.2 Solanum lycopersicum HOM05D007367 ORTHO05D008866 4.4e-39 165.2 161 53.4
TWI38G2056 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 1.3e-38 163.7 170 53.5
CsaV3_4G007130 Cucumis sativus L. HOM05D007367 ORTHO05D008866 2.2e-38 162.9 165 51.5
TWI38G0281 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 2.2e-38 162.9 170 52.9
Aa31LG6G1950 Aethionema arabicum HOM05D007367 ORTHO05D008866 2.9e-38 162.5 170 49.4
Aqoxy7G01946 Aquilegia oxysepala HOM05D000773 ORTHO05D008866 3.2e-37 159.1 153 52.3
Lsat_1_v5_gn_5_43721 Lactuca sativa HOM05D007367 ORTHO05D008866 3.2e-37 159.1 163 52.1
RcHm_v2.0_Chr7g0215331 Rosa chinensis HOM05D007367 ORTHO05D008866 4.1e-37 158.7 160 50.0
TAR374G1177 Trochodendron aralioides HOM05D007367 ORTHO05D008866 9.2e-37 157.5 145 56.6
CAN.G947.33 Capsicum annuum HOM05D007367 ORTHO05D008866 5.9e-36 154.8 146 53.4
MSTRG.25748 Avicennia marina HOM05D007367 ORTHO05D008866 1.0e-35 154.1 160 51.2
FvH4_5g25140 Fragaria vesca HOM05D007367 ORTHO05D008866 1.3e-35 153.7 160 49.4
Glyma.16G123600 Glycine max HOM05D007367 ORTHO05D008866 2.9e-35 152.5 163 46.0
Os08g0162500 Oryza sativa ssp. japonica HOM05D007367 ORTHO05D008866 3.9e-35 152.1 160 47.5
Glyma.02G045600 Glycine max HOM05D007367 ORTHO05D008866 6.6e-35 151.4 163 46.0
C01p13270 Brassica napus HOM05D007367 ORTHO05D008866 8.6e-35 151.0 159 49.7
Lj4g0011102 Lotus japonicus HOM05D007367 ORTHO05D008866 8.6e-35 151.0 163 46.6
BcaC09g51422 Brassica carinata HOM05D007367 ORTHO05D008866 1.1e-34 150.6 170 47.6
ECA246G3716 Erigeron canadensis HOM05D007367 ORTHO05D008866 1.5e-34 150.2 165 46.1
Lalb_Chr16g0391641 Lupinus albus HOM05D007367 ORTHO05D008866 1.5e-34 150.2 169 47.9
A01p11220 Brassica napus HOM05D007367 ORTHO05D008866 1.9e-34 149.8 170 45.9
FAN08G2564 Fragaria x ananassa HOM05D007367 ORTHO05D008866 1.9e-34 149.8 160 48.1
CDE02G0575 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 2.5e-34 149.4 143 52.4
FAN13G0070 Fragaria x ananassa HOM05D007367 ORTHO05D008866 2.5e-34 149.4 160 48.1
BolC1t01302H Brassica oleracea HOM05D007367 ORTHO05D008866 7.3e-34 147.9 170 46.5
BcaNung01789 Brassica carinata HOM05D007367 ORTHO05D008866 2.1e-33 146.4 170 45.3
BraA01t01068Z Brassica rapa HOM05D007367 ORTHO05D008866 2.8e-33 146.0 170 45.3
HanXRQChr02g0034081 Helianthus annuus HOM05D007367 ORTHO05D008866 8.0e-33 144.4 152 50.0
Medtr8g075140 Medicago truncatula HOM05D007367 ORTHO05D008866 8.0e-33 144.4 163 44.2
Peaxi162Scf00876g00431 Petunia axillaris HOM05D007367 ORTHO05D008866 1.0e-32 144.1 159 48.4
TPR.G19504 Trifolium pratense HOM05D007367 ORTHO05D008866 1.8e-32 143.3 163 45.4
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 3.1e-32 142.5 157 47.8
VMungo0251G1728 Vigna mungo HOM05D007367 ORTHO05D008866 3.1e-32 142.5 156 44.9
Atru.chr8.2637 Acer truncatum HOM05D007367 ORTHO05D008866 1.2e-31 140.6 158 50.0
arahy.Tifrunner.gnm1.ann1.H9MF1T Arachis hypogaea HOM05D007367 ORTHO05D008866 1.2e-31 140.6 159 44.0
Phvul.003G266000 Phaseolus vulgaris HOM05D007367 ORTHO05D008866 7.5e-31 137.9 178 41.0
Psat4g102200 Pisum sativum HOM05D007367 ORTHO05D008866 9.8e-31 137.5 160 42.5
PGR042G2818 Punica granatum HOM05D007367 ORTHO05D008866 6.4e-30 134.8 162 47.5
unitig_748.g8147 Utricularia gibba HOM05D007367 ORTHO05D008866 6.4e-30 134.8 178 42.1
PSO063G4690 Papaver somniferum HOM05D007367 ORTHO05D008866 7.0e-29 131.3 156 48.1
Ah.09g231810 Amaranthus hybridus HOM05D007367 ORTHO05D008866 2.0e-28 129.8 159 47.8
PGSC0003DMG400029288 Solanum tuberosum HOM05D007367 ORTHO05D008866 2.0e-28 129.8 174 43.7
vmacro00097 Vaccinium macrocarpon HOM05D007367 ORTHO05D008866 2.7e-28 129.4 230 39.6
Zm00001eb415480 Zea mays HOM05D007367 ORTHO05D008866 6.0e-28 128.3 150 44.0
DCAR_002187 Daucus carota HOM05D007367 ORTHO05D008866 1.3e-27 127.1 106 63.2
arahy.Tifrunner.gnm1.ann1.I4PABW Arachis hypogaea HOM05D007367 ORTHO05D008866 2.3e-27 126.3 187 38.0
FAN18G1407 Fragaria x ananassa HOM05D007367 ORTHO05D008866 3.0e-27 125.9 160 43.8
AUR62030407 Chenopodium quinoa HOM05D007367 ORTHO05D008866 3.9e-27 125.6 162 45.7
Hund14309 Selenicereus undatus HOM05D007367 ORTHO05D008866 8.6e-27 124.4 174 43.7
FAN04G0859 Fragaria x ananassa HOM05D007367 ORTHO05D008866 1.1e-26 124.0 160 43.1
PSO675G5685 Papaver somniferum HOM05D007367 ORTHO05D008866 1.1e-24 117.5 118 52.5
CDE11G0580 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 5.8e-23 111.7 113 51.3
Nitab4.5_0011129g0040 Nicotiana tabacum HOM05D007367 ORTHO05D008866 3.5e-20 102.4 120 48.3
HPP92_022724 Vanilla planifolia HOM05D007367 ORTHO05D008866 4.6e-20 102.1 153 37.3
Thecc.04G178000 Theobroma cacao HOM05D000090 ORTHO05D001322 2.5e-18 96.3 78 65.4
Thhalv10026808m.g Eutrema salsugineum HOM05D007367 ORTHO05D008866 3.3e-18 95.9 101 48.5
Oeu046776.1 Olea europaea HOM05D007367 ORTHO05D008866 1.8e-16 90.1 89 50.6
Nitab4.5_0001913g0180 Nicotiana tabacum HOM05D007367 ORTHO05D008866 1.1e-13 80.9 115 42.6
Eucgr.E01150 Eucalyptus grandis HOM05D007367 ORTHO05D008866 5.1e-11 72.0 93 40.9
Haze_08425 Corylus avellana HOM05D007367 ORTHO05D008866 1.5e-10 70.5 92 44.6
Oeu046774.1 Olea europaea HOM05D007367 ORTHO05D008866 5.6e-10 68.6 61 55.7
Actinidia01248 Actinidia chinensis HOM05D007367 ORTHO05D008866 1.6e-09 67.0 84 48.8
SEGI_16341 Sequoiadendron giganteum HOM05D007367 ORTHO05D008866 1.6e-09 67.0 95 38.9
Atru.chr8.2641 Acer truncatum HOM05D007367 ORTHO05D008866 6.2e-09 65.1 93 44.1
Pp3c23_7640 Physcomitrium patens HOM05D007367 ORTHO05D008866 1.8e-08 63.5 154 26.6
Cpa.g.sc103.6 Carica papaya HOM05D007367 ORTHO05D008866 4.4e-07 58.9 70 45.7
Gohir.A08G148800 Gossypium hirsutum HOM05D036757 ORTHO05D048069 1.7e-06 57.0 103 39.8


User provided reference genes

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